Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.54■□□□□ 0.72
BDNFP23560 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.54■□□□□ 0.72
BDNFP23560 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BDNFP23560 AL645929.1-201ENST00000420084 975 ntBASIC19.54■□□□□ 0.72
BDNFP23560 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.54■□□□□ 0.72
BDNFP23560 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
BDNFP23560 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.54■□□□□ 0.72
BDNFP23560 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.54■□□□□ 0.72
BDNFP23560 MIR3180-4-201ENST00000582223 153 ntBASIC19.54■□□□□ 0.72
BDNFP23560 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
BDNFP23560 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.54■□□□□ 0.72
BDNFP23560 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
BDNFP23560 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
BDNFP23560 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
BDNFP23560 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BDNFP23560 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
BDNFP23560 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
BDNFP23560 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.53■□□□□ 0.72
BDNFP23560 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.53■□□□□ 0.72
BDNFP23560 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.53■□□□□ 0.72
BDNFP23560 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.53■□□□□ 0.72
BDNFP23560 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
BDNFP23560 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
BDNFP23560 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BDNFP23560 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.52■□□□□ 0.72
BDNFP23560 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
BDNFP23560 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BDNFP23560 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BDNFP23560 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
BDNFP23560 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
BDNFP23560 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BDNFP23560 AP000593.1-201ENST00000393668 712 ntBASIC19.52■□□□□ 0.72
BDNFP23560 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.52■□□□□ 0.72
BDNFP23560 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BDNFP23560 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
BDNFP23560 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.52■□□□□ 0.72
BDNFP23560 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
BDNFP23560 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
BDNFP23560 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
BDNFP23560 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 AL163051.1-201ENST00000569214 1512 ntBASIC19.51■□□□□ 0.71
BDNFP23560 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.51■□□□□ 0.71
BDNFP23560 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
BDNFP23560 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.51■□□□□ 0.71
BDNFP23560 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.51■□□□□ 0.71
BDNFP23560 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.51■□□□□ 0.71
BDNFP23560 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 PVRIG2P-201ENST00000435460 978 ntBASIC19.51■□□□□ 0.71
BDNFP23560 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.51■□□□□ 0.71
BDNFP23560 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.51■□□□□ 0.71
BDNFP23560 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.51■□□□□ 0.71
BDNFP23560 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
BDNFP23560 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
BDNFP23560 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.51■□□□□ 0.71
BDNFP23560 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BDNFP23560 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BDNFP23560 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BDNFP23560 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BDNFP23560 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.5■□□□□ 0.71
BDNFP23560 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BDNFP23560 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BDNFP23560 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.5■□□□□ 0.71
BDNFP23560 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.5■□□□□ 0.71
BDNFP23560 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BDNFP23560 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
BDNFP23560 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.5■□□□□ 0.71
BDNFP23560 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms