Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 MKNK2P1-201ENST00000437526 628 ntBASIC8.25□□□□□ -1.09
USH2AO75445 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 CCND1-203ENST00000536559 553 ntTSL 3 BASIC8.25□□□□□ -1.09
USH2AO75445 AC021087.4-201ENST00000563761 564 ntBASIC8.25□□□□□ -1.09
USH2AO75445 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC8.25□□□□□ -1.09
USH2AO75445 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC8.25□□□□□ -1.09
USH2AO75445 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC8.25□□□□□ -1.09
USH2AO75445 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC8.25□□□□□ -1.09
USH2AO75445 MIR661-201ENST00000384842 89 ntBASIC8.25□□□□□ -1.09
USH2AO75445 DDT-206ENST00000430101 573 ntTSL 2 BASIC8.25□□□□□ -1.09
USH2AO75445 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 CEND1P1-201ENST00000451006 455 ntBASIC8.25□□□□□ -1.09
USH2AO75445 AC105339.3-201ENST00000560043 636 ntBASIC8.25□□□□□ -1.09
USH2AO75445 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
USH2AO75445 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC8.25□□□□□ -1.09
USH2AO75445 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC8.25□□□□□ -1.09
USH2AO75445 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
USH2AO75445 AC007225.1-201ENST00000566331 1836 ntBASIC8.25□□□□□ -1.09
USH2AO75445 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC8.25□□□□□ -1.09
USH2AO75445 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 AJ011932.1-201ENST00000621707 465 ntBASIC8.25□□□□□ -1.09
USH2AO75445 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
USH2AO75445 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC8.25□□□□□ -1.09
USH2AO75445 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC8.25□□□□□ -1.09
USH2AO75445 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC8.25□□□□□ -1.09
USH2AO75445 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC8.24□□□□□ -1.09
USH2AO75445 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC8.24□□□□□ -1.09
USH2AO75445 NOP2-220ENST00000545915 630 ntTSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 MOK-225ENST00000522867 1883 ntTSL 5 BASIC8.24□□□□□ -1.09
USH2AO75445 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC8.24□□□□□ -1.09
USH2AO75445 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC8.24□□□□□ -1.09
USH2AO75445 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
USH2AO75445 AC002472.2-201ENST00000442739 958 ntBASIC8.24□□□□□ -1.09
USH2AO75445 TSPY16P-201ENST00000449843 468 ntBASIC8.24□□□□□ -1.09
USH2AO75445 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC8.24□□□□□ -1.09
USH2AO75445 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC8.24□□□□□ -1.09
USH2AO75445 AC011467.2-201ENST00000598425 242 ntBASIC8.24□□□□□ -1.09
USH2AO75445 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 AC005593.1-201ENST00000624894 515 ntBASIC8.24□□□□□ -1.09
USH2AO75445 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC8.24□□□□□ -1.09
USH2AO75445 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
USH2AO75445 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC8.24□□□□□ -1.09
USH2AO75445 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
USH2AO75445 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC8.24□□□□□ -1.09
USH2AO75445 VENTXP7-201ENST00000475503 772 ntBASIC8.24□□□□□ -1.09
USH2AO75445 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC8.24□□□□□ -1.09
USH2AO75445 AC004449.1-201ENST00000564240 433 ntBASIC8.24□□□□□ -1.09
USH2AO75445 AC011840.4-201ENST00000578471 627 ntBASIC8.24□□□□□ -1.09
USH2AO75445 MIR3180-4-201ENST00000582223 153 ntBASIC8.24□□□□□ -1.09
USH2AO75445 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC8.24□□□□□ -1.09
USH2AO75445 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC8.24□□□□□ -1.09
USH2AO75445 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC8.24□□□□□ -1.09
USH2AO75445 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
USH2AO75445 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC8.23□□□□□ -1.09
USH2AO75445 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC8.23□□□□□ -1.09
USH2AO75445 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC8.23□□□□□ -1.09
USH2AO75445 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
USH2AO75445 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC8.23□□□□□ -1.09
USH2AO75445 AC112777.1-201ENST00000540175 1423 ntBASIC8.23□□□□□ -1.09
USH2AO75445 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
USH2AO75445 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC8.23□□□□□ -1.09
USH2AO75445 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC8.23□□□□□ -1.09
USH2AO75445 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC8.23□□□□□ -1.09
USH2AO75445 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
USH2AO75445 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms