Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM13O60858 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
TRIM13O60858 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM13O60858 AC239809.2-201ENST00000415381 517 ntBASIC18.29■□□□□ 0.52
TRIM13O60858 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM13O60858 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM13O60858 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.29■□□□□ 0.52
TRIM13O60858 AC233263.1-201ENST00000578059 224 ntBASIC18.29■□□□□ 0.52
TRIM13O60858 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM13O60858 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRIM13O60858 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM13O60858 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 AC134043.2-201ENST00000624206 2238 ntBASIC18.29■□□□□ 0.52
TRIM13O60858 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 GNAS-203ENST00000306120 1878 ntBASIC18.29■□□□□ 0.52
TRIM13O60858 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM13O60858 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TRIM13O60858 RCC2P3-201ENST00000418112 1537 ntBASIC18.28■□□□□ 0.52
TRIM13O60858 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TRIM13O60858 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM13O60858 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM13O60858 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TRIM13O60858 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 AC026366.1-201ENST00000488803 879 ntBASIC18.28■□□□□ 0.52
TRIM13O60858 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.28■□□□□ 0.52
TRIM13O60858 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 MYLKP1-201ENST00000509077 1580 ntBASIC18.28■□□□□ 0.52
TRIM13O60858 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM13O60858 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM13O60858 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TRIM13O60858 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
TRIM13O60858 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM13O60858 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.27■□□□□ 0.52
TRIM13O60858 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TRIM13O60858 HTR7P1-201ENST00000538670 1336 ntBASIC18.27■□□□□ 0.52
TRIM13O60858 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.27■□□□□ 0.52
TRIM13O60858 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TRIM13O60858 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRIM13O60858 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM13O60858 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM13O60858 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM13O60858 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM13O60858 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TRIM13O60858 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TRIM13O60858 MIR935-201ENST00000401179 91 ntBASIC18.27■□□□□ 0.52
TRIM13O60858 NIFKP9-201ENST00000419265 221 ntBASIC18.27■□□□□ 0.52
TRIM13O60858 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.27■□□□□ 0.52
TRIM13O60858 AC091390.4-202ENST00000476426 537 ntBASIC18.27■□□□□ 0.52
TRIM13O60858 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.27■□□□□ 0.52
TRIM13O60858 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM13O60858 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.27■□□□□ 0.52
TRIM13O60858 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
TRIM13O60858 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.27■□□□□ 0.52
TRIM13O60858 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
TRIM13O60858 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRIM13O60858 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM13O60858 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.27■□□□□ 0.51
TRIM13O60858 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.51
TRIM13O60858 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRIM13O60858 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.27■□□□□ 0.51
TRIM13O60858 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRIM13O60858 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRIM13O60858 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM13O60858 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM13O60858 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM13O60858 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM13O60858 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM13O60858 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM13O60858 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
TRIM13O60858 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM13O60858 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRIM13O60858 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM13O60858 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM13O60858 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms