Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
HOXC11O43248 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
HOXC11O43248 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXC11O43248 AC026396.1-201ENST00000419388 421 ntBASIC18.87■□□□□ 0.61
HOXC11O43248 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.87■□□□□ 0.61
HOXC11O43248 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXC11O43248 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 AC012615.1-201ENST00000565797 1299 ntBASIC18.87■□□□□ 0.61
HOXC11O43248 AC111152.3-201ENST00000569699 673 ntBASIC18.87■□□□□ 0.61
HOXC11O43248 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
HOXC11O43248 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.87■□□□□ 0.61
HOXC11O43248 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC11O43248 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HOXC11O43248 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC11O43248 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC11O43248 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HOXC11O43248 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.86■□□□□ 0.61
HOXC11O43248 AP000867.3-201ENST00000524675 377 ntBASIC18.86■□□□□ 0.61
HOXC11O43248 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC11O43248 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC11O43248 IGHV3-41-201ENST00000613121 348 ntBASIC18.86■□□□□ 0.61
HOXC11O43248 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
HOXC11O43248 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
HOXC11O43248 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC11O43248 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC11O43248 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 AC005332.7-201ENST00000614046 2005 ntBASIC18.86■□□□□ 0.61
HOXC11O43248 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC11O43248 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC11O43248 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXC11O43248 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
HOXC11O43248 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC11O43248 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC11O43248 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXC11O43248 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
HOXC11O43248 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC11O43248 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC11O43248 RN7SL510P-201ENST00000581311 263 ntBASIC18.85■□□□□ 0.61
HOXC11O43248 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.85■□□□□ 0.61
HOXC11O43248 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.85■□□□□ 0.61
HOXC11O43248 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC11O43248 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
HOXC11O43248 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC11O43248 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC11O43248 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC11O43248 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC11O43248 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC11O43248 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC11O43248 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC11O43248 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC11O43248 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HOXC11O43248 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC11O43248 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC11O43248 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC11O43248 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.84■□□□□ 0.61
HOXC11O43248 TSPY19P-201ENST00000418461 509 ntBASIC18.84■□□□□ 0.61
HOXC11O43248 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.84■□□□□ 0.61
HOXC11O43248 TSPY18P-201ENST00000441642 509 ntBASIC18.84■□□□□ 0.61
HOXC11O43248 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.84■□□□□ 0.61
HOXC11O43248 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HOXC11O43248 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC11O43248 AL592071.1-201ENST00000611956 408 ntBASIC18.84■□□□□ 0.61
HOXC11O43248 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.84■□□□□ 0.61
HOXC11O43248 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC11O43248 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC11O43248 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC11O43248 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HOXC11O43248 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC11O43248 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC11O43248 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HOXC11O43248 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms