Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A3BPQ9Y5P4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 HOMER2P1-201ENST00000455653 964 ntBASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 MIR3180-5-201ENST00000583743 153 ntBASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 MYC-208ENST00000641036 567 ntBASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 AC008556.1-201ENST00000610908 2040 ntBASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
COL4A3BPQ9Y5P4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 ANO7L1-203ENST00000602586 1720 ntBASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.75■□□□□ 0.91
COL4A3BPQ9Y5P4 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 AL357033.4-201ENST00000617703 1807 ntBASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 WIZP1-201ENST00000531444 2299 ntBASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 GCSHP2-201ENST00000560971 527 ntBASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A3BPQ9Y5P4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms