Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 AL121832.2-201ENST00000610979 668 ntBASIC16.97■□□□□ 0.31
CLN6Q9NWW5 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 HLA-B-256ENST00000639848 1089 ntBASIC16.97■□□□□ 0.31
CLN6Q9NWW5 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 AC138028.4-201ENST00000564984 1845 ntBASIC16.97■□□□□ 0.31
CLN6Q9NWW5 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.97■□□□□ 0.31
CLN6Q9NWW5 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
CLN6Q9NWW5 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 GATS-209ENST00000454084 1030 ntTSL 3 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 BET1L-207ENST00000529614 560 ntTSL 5 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 REXO2-208ENST00000539754 791 ntTSL 2 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.96■□□□□ 0.31
CLN6Q9NWW5 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLN6Q9NWW5 AC139713.2-201ENST00000641328 2723 ntBASIC16.96■□□□□ 0.3
CLN6Q9NWW5 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.3
CLN6Q9NWW5 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CLN6Q9NWW5 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CLN6Q9NWW5 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.96■□□□□ 0.3
CLN6Q9NWW5 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
CLN6Q9NWW5 MTMR9LP-203ENST00000426597 1545 ntBASIC16.96■□□□□ 0.3
CLN6Q9NWW5 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC16.96■□□□□ 0.3
CLN6Q9NWW5 AC112777.1-201ENST00000540175 1423 ntBASIC16.96■□□□□ 0.3
CLN6Q9NWW5 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CLN6Q9NWW5 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 AC083906.2-201ENST00000511578 360 ntBASIC16.95■□□□□ 0.3
CLN6Q9NWW5 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 AL121829.2-201ENST00000620908 328 ntBASIC16.95■□□□□ 0.3
CLN6Q9NWW5 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.95■□□□□ 0.3
CLN6Q9NWW5 SIRPAP1-201ENST00000448467 1770 ntBASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms