Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
POLR2J3Q9H1A7 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
POLR2J3Q9H1A7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
POLR2J3Q9H1A7 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
POLR2J3Q9H1A7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.34
POLR2J3Q9H1A7 HTR7P1-201ENST00000538670 1336 ntBASIC17.21■□□□□ 0.34
POLR2J3Q9H1A7 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
POLR2J3Q9H1A7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
POLR2J3Q9H1A7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 KRT16P1-201ENST00000399124 1418 ntBASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.2■□□□□ 0.34
POLR2J3Q9H1A7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 LTB4R2-202ENST00000528054 3092 ntBASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 AC091390.4-202ENST00000476426 537 ntBASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 AC073648.6-201ENST00000641589 218 ntBASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 AL031985.4-201ENST00000642138 673 ntBASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 KRT8P45-201ENST00000414328 1447 ntBASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
POLR2J3Q9H1A7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
POLR2J3Q9H1A7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms