Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.37■□□□□ 0.69
CDX2Q99626 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.37■□□□□ 0.69
CDX2Q99626 AC108751.1-201ENST00000490852 363 ntBASIC19.37■□□□□ 0.69
CDX2Q99626 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CDX2Q99626 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CDX2Q99626 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.37■□□□□ 0.69
CDX2Q99626 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CDX2Q99626 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.37■□□□□ 0.69
CDX2Q99626 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CDX2Q99626 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CDX2Q99626 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.36■□□□□ 0.69
CDX2Q99626 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX2Q99626 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX2Q99626 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX2Q99626 AL691432.2-201ENST00000607222 2038 ntBASIC19.36■□□□□ 0.69
CDX2Q99626 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.36■□□□□ 0.69
CDX2Q99626 AL139400.1-201ENST00000366220 510 ntBASIC19.36■□□□□ 0.69
CDX2Q99626 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX2Q99626 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CDX2Q99626 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.36■□□□□ 0.69
CDX2Q99626 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.36■□□□□ 0.69
CDX2Q99626 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.36■□□□□ 0.69
CDX2Q99626 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.36■□□□□ 0.69
CDX2Q99626 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.36■□□□□ 0.69
CDX2Q99626 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.36■□□□□ 0.69
CDX2Q99626 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.36■□□□□ 0.69
CDX2Q99626 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CDX2Q99626 AC005593.1-201ENST00000624894 515 ntBASIC19.36■□□□□ 0.69
CDX2Q99626 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.36■□□□□ 0.69
CDX2Q99626 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX2Q99626 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.36■□□□□ 0.69
CDX2Q99626 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CDX2Q99626 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX2Q99626 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CDX2Q99626 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.35■□□□□ 0.69
CDX2Q99626 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CDX2Q99626 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CDX2Q99626 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CDX2Q99626 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CDX2Q99626 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CDX2Q99626 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CDX2Q99626 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CDX2Q99626 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CDX2Q99626 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.35■□□□□ 0.69
CDX2Q99626 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.35■□□□□ 0.69
CDX2Q99626 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.35■□□□□ 0.69
CDX2Q99626 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.35■□□□□ 0.69
CDX2Q99626 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.35■□□□□ 0.69
CDX2Q99626 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.35■□□□□ 0.69
CDX2Q99626 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.35■□□□□ 0.69
CDX2Q99626 AL138831.2-201ENST00000606564 490 ntBASIC19.35■□□□□ 0.69
CDX2Q99626 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.35■□□□□ 0.69
CDX2Q99626 AL513190.1-201ENST00000621254 727 ntBASIC19.35■□□□□ 0.69
CDX2Q99626 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CDX2Q99626 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CDX2Q99626 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CDX2Q99626 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CDX2Q99626 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
CDX2Q99626 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.34■□□□□ 0.69
CDX2Q99626 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDX2Q99626 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CDX2Q99626 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CDX2Q99626 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CDX2Q99626 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CDX2Q99626 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.34■□□□□ 0.69
CDX2Q99626 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
CDX2Q99626 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.34■□□□□ 0.69
CDX2Q99626 AC068472.1-201ENST00000474589 881 ntBASIC19.34■□□□□ 0.69
CDX2Q99626 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CDX2Q99626 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.34■□□□□ 0.69
CDX2Q99626 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.34■□□□□ 0.69
CDX2Q99626 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.34■□□□□ 0.69
CDX2Q99626 AC004449.1-201ENST00000564240 433 ntBASIC19.34■□□□□ 0.69
CDX2Q99626 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.34■□□□□ 0.69
CDX2Q99626 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
CDX2Q99626 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDX2Q99626 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CDX2Q99626 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.34■□□□□ 0.69
CDX2Q99626 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CDX2Q99626 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CDX2Q99626 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDX2Q99626 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDX2Q99626 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDX2Q99626 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDX2Q99626 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CDX2Q99626 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.33■□□□□ 0.68
CDX2Q99626 AC069262.1-201ENST00000539058 672 ntBASIC19.33■□□□□ 0.68
CDX2Q99626 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDX2Q99626 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.33■□□□□ 0.68
CDX2Q99626 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.33■□□□□ 0.68
CDX2Q99626 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.33■□□□□ 0.68
CDX2Q99626 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDX2Q99626 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDX2Q99626 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CDX2Q99626 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDX2Q99626 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDX2Q99626 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.33■□□□□ 0.68
CDX2Q99626 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.33■□□□□ 0.68
CDX2Q99626 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CDX2Q99626 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms