Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS39Q96JC1 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS39Q96JC1 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS39Q96JC1 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS39Q96JC1 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS39Q96JC1 AL162741.1-201ENST00000565563 1558 ntBASIC18.65■□□□□ 0.58
VPS39Q96JC1 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VPS39Q96JC1 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS39Q96JC1 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS39Q96JC1 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.65■□□□□ 0.58
VPS39Q96JC1 FAM197Y4-202ENST00000622692 608 ntBASIC18.65■□□□□ 0.58
VPS39Q96JC1 MYC-208ENST00000641036 567 ntBASIC18.65■□□□□ 0.58
VPS39Q96JC1 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS39Q96JC1 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VPS39Q96JC1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS39Q96JC1 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS39Q96JC1 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS39Q96JC1 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS39Q96JC1 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VPS39Q96JC1 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS39Q96JC1 AL133373.2-201ENST00000623187 2828 ntBASIC18.64■□□□□ 0.58
VPS39Q96JC1 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS39Q96JC1 RCC2P3-201ENST00000418112 1537 ntBASIC18.64■□□□□ 0.58
VPS39Q96JC1 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS39Q96JC1 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.58
VPS39Q96JC1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS39Q96JC1 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
VPS39Q96JC1 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.64■□□□□ 0.58
VPS39Q96JC1 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS39Q96JC1 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS39Q96JC1 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 FAM207BP-201ENST00000447172 505 ntBASIC18.64■□□□□ 0.57
VPS39Q96JC1 FAM201B-201ENST00000458407 597 ntBASIC18.64■□□□□ 0.57
VPS39Q96JC1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS39Q96JC1 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS39Q96JC1 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS39Q96JC1 KRT8P45-201ENST00000414328 1447 ntBASIC18.64■□□□□ 0.57
VPS39Q96JC1 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS39Q96JC1 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS39Q96JC1 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS39Q96JC1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS39Q96JC1 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 AC011506.1-201ENST00000474329 610 ntBASIC18.63■□□□□ 0.57
VPS39Q96JC1 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 AC130371.2-201ENST00000619443 611 ntBASIC18.63■□□□□ 0.57
VPS39Q96JC1 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 AC026471.1-201ENST00000564629 3026 ntBASIC18.63■□□□□ 0.57
VPS39Q96JC1 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 AL135905.2-201ENST00000584934 1404 ntBASIC18.63■□□□□ 0.57
VPS39Q96JC1 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS39Q96JC1 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
VPS39Q96JC1 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms