Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 BX664615.1-201ENST00000443558 458 ntBASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 AC010240.3-201ENST00000607688 395 ntBASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 AC024243.1-201ENST00000609234 778 ntBASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTHRC1Q96CG8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 SDHAP2-201ENST00000455183 2001 ntBASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 MIR149-201ENST00000384879 89 ntBASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 ATP5G1P1-201ENST00000448724 379 ntBASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 AL031432.5-201ENST00000641059 760 ntBASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CTHRC1Q96CG8 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CTHRC1Q96CG8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
CTHRC1Q96CG8 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 COX11P1-201ENST00000489116 835 ntBASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 AC009065.1-201ENST00000564055 1225 ntBASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTHRC1Q96CG8 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 AC009102.3-201ENST00000623118 1491 ntBASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 GCSHP2-201ENST00000560971 527 ntBASIC17.19■□□□□ 0.34
CTHRC1Q96CG8 MIR3917-201ENST00000580971 93 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms