Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HPS3Q969F9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HPS3Q969F9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HPS3Q969F9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HPS3Q969F9 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
HPS3Q969F9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.58■□□□□ 0.89
HPS3Q969F9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HPS3Q969F9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HPS3Q969F9 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HPS3Q969F9 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HPS3Q969F9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.58■□□□□ 0.89
HPS3Q969F9 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.58■□□□□ 0.89
HPS3Q969F9 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.58■□□□□ 0.89
HPS3Q969F9 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
HPS3Q969F9 EGLN1P1-201ENST00000531623 762 ntBASIC20.58■□□□□ 0.89
HPS3Q969F9 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.58■□□□□ 0.89
HPS3Q969F9 FAM87A-204ENST00000613235 858 ntBASIC20.58■□□□□ 0.89
HPS3Q969F9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.58■□□□□ 0.89
HPS3Q969F9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.58■□□□□ 0.89
HPS3Q969F9 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HPS3Q969F9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
HPS3Q969F9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HPS3Q969F9 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
HPS3Q969F9 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
HPS3Q969F9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
HPS3Q969F9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HPS3Q969F9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HPS3Q969F9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.58■□□□□ 0.88
HPS3Q969F9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.58■□□□□ 0.88
HPS3Q969F9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.58■□□□□ 0.88
HPS3Q969F9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HPS3Q969F9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HPS3Q969F9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.57■□□□□ 0.88
HPS3Q969F9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
HPS3Q969F9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.57■□□□□ 0.88
HPS3Q969F9 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 AC087499.1-201ENST00000418141 1075 ntBASIC20.57■□□□□ 0.88
HPS3Q969F9 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.57■□□□□ 0.88
HPS3Q969F9 MYLKP1-201ENST00000509077 1580 ntBASIC20.57■□□□□ 0.88
HPS3Q969F9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
HPS3Q969F9 KRT8P50-201ENST00000562022 1438 ntBASIC20.57■□□□□ 0.88
HPS3Q969F9 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
HPS3Q969F9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
HPS3Q969F9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
HPS3Q969F9 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HPS3Q969F9 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.57■□□□□ 0.88
HPS3Q969F9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.56■□□□□ 0.88
HPS3Q969F9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
HPS3Q969F9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.56■□□□□ 0.88
HPS3Q969F9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 AC112777.1-201ENST00000540175 1423 ntBASIC20.56■□□□□ 0.88
HPS3Q969F9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
HPS3Q969F9 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.56■□□□□ 0.88
HPS3Q969F9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.56■□□□□ 0.88
HPS3Q969F9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.56■□□□□ 0.88
HPS3Q969F9 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.56■□□□□ 0.88
HPS3Q969F9 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.56■□□□□ 0.88
HPS3Q969F9 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.56■□□□□ 0.88
HPS3Q969F9 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
HPS3Q969F9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.56■□□□□ 0.88
HPS3Q969F9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.56■□□□□ 0.88
HPS3Q969F9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
HPS3Q969F9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HPS3Q969F9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
HPS3Q969F9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HPS3Q969F9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HPS3Q969F9 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.55■□□□□ 0.88
HPS3Q969F9 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HPS3Q969F9 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.55■□□□□ 0.88
HPS3Q969F9 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HPS3Q969F9 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HPS3Q969F9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.55■□□□□ 0.88
HPS3Q969F9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
HPS3Q969F9 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.55■□□□□ 0.88
HPS3Q969F9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms