Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 PNMA6B-201ENST00000538162 1200 ntBASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 AC073648.6-201ENST00000641589 218 ntBASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ZNF540Q8NDQ6 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 AC099398.1-201ENST00000567919 2776 ntBASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 UBE2SP1-201ENST00000450587 669 ntBASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 RPS2P52-201ENST00000469610 820 ntBASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.21■□□□□ 0.35
ZNF540Q8NDQ6 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ZNF540Q8NDQ6 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
ZNF540Q8NDQ6 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ZNF540Q8NDQ6 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ZNF540Q8NDQ6 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.19■□□□□ 0.34
ZNF540Q8NDQ6 AC009053.2-201ENST00000563701 2365 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms