Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC65Q8IXS2 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC65Q8IXS2 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC65Q8IXS2 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC65Q8IXS2 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC65Q8IXS2 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC65Q8IXS2 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC65Q8IXS2 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CCDC65Q8IXS2 LINC01568-207ENST00000641790 1380 ntBASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 ECEL1P2-202ENST00000465689 757 ntBASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 KRT8P50-201ENST00000562022 1438 ntBASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC65Q8IXS2 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 BCL2-203ENST00000589955 5011 ntBASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 AC087499.1-201ENST00000418141 1075 ntBASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CCDC65Q8IXS2 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC65Q8IXS2 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.58■□□□□ 0.88
CCDC65Q8IXS2 KRT8P7-201ENST00000533003 1432 ntBASIC20.58■□□□□ 0.88
CCDC65Q8IXS2 HOXB1-202ENST00000577092 1414 ntBASIC20.58■□□□□ 0.88
CCDC65Q8IXS2 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
CCDC65Q8IXS2 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.58■□□□□ 0.88
CCDC65Q8IXS2 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC65Q8IXS2 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC65Q8IXS2 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC65Q8IXS2 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC65Q8IXS2 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CCDC65Q8IXS2 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC65Q8IXS2 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms