Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PRELID1P1-202ENST00000567272 903 ntBASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 AC104581.1-202ENST00000635932 2618 ntBASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SH3RF1Q7Z6J0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.27■□□□□ 0.99
SH3RF1Q7Z6J0 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SH3RF1Q7Z6J0 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
SH3RF1Q7Z6J0 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SH3RF1Q7Z6J0 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.27■□□□□ 0.99
SH3RF1Q7Z6J0 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
SH3RF1Q7Z6J0 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
SH3RF1Q7Z6J0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 CR769767.2-201ENST00000622735 460 ntBASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SH3RF1Q7Z6J0 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 AP000523.1-201ENST00000398242 1049 ntBASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 KRT8P11-201ENST00000409686 1436 ntBASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 KRT8P10-201ENST00000450021 1447 ntBASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 AC092329.2-201ENST00000598402 547 ntBASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 ANO7L1-203ENST00000602586 1720 ntBASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SH3RF1Q7Z6J0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms