Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.99□□□□□ -0.01
CX3CL1P78423 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC14.99□□□□□ -0.01
CX3CL1P78423 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC14.99□□□□□ -0.01
CX3CL1P78423 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 AC018470.1-201ENST00000624790 3129 ntBASIC14.99□□□□□ -0.01
CX3CL1P78423 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC14.99□□□□□ -0.01
CX3CL1P78423 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
CX3CL1P78423 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.99□□□□□ -0.01
CX3CL1P78423 COMP-202ENST00000425807 2292 ntTSL 2 BASIC14.99□□□□□ -0.01
CX3CL1P78423 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC14.99□□□□□ -0.01
CX3CL1P78423 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 AL596275.1-201ENST00000423464 877 ntBASIC14.99□□□□□ -0.01
CX3CL1P78423 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC14.99□□□□□ -0.01
CX3CL1P78423 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC14.99□□□□□ -0.01
CX3CL1P78423 AP005242.2-201ENST00000580065 1175 ntBASIC14.99□□□□□ -0.01
CX3CL1P78423 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 AP000525.1-201ENST00000608286 694 ntBASIC14.99□□□□□ -0.01
CX3CL1P78423 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
CX3CL1P78423 AC009113.1-201ENST00000570267 2443 ntBASIC14.99□□□□□ -0.01
CX3CL1P78423 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
CX3CL1P78423 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
CX3CL1P78423 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 AP000997.3-201ENST00000623333 2250 ntBASIC14.99□□□□□ -0.01
CX3CL1P78423 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
CX3CL1P78423 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CX3CL1P78423 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 AC104581.1-202ENST00000635932 2618 ntBASIC14.98□□□□□ -0.01
CX3CL1P78423 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CX3CL1P78423 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.98□□□□□ -0.01
CX3CL1P78423 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC14.98□□□□□ -0.01
CX3CL1P78423 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
CX3CL1P78423 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC14.98□□□□□ -0.01
CX3CL1P78423 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC14.98□□□□□ -0.01
CX3CL1P78423 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC14.98□□□□□ -0.01
CX3CL1P78423 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
CX3CL1P78423 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CX3CL1P78423 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
CX3CL1P78423 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.98□□□□□ -0.01
CX3CL1P78423 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
CX3CL1P78423 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CX3CL1P78423 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
CX3CL1P78423 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CX3CL1P78423 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC14.97□□□□□ -0.01
CX3CL1P78423 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC14.97□□□□□ -0.01
CX3CL1P78423 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 FITM1-202ENST00000559294 800 ntBASIC14.97□□□□□ -0.01
CX3CL1P78423 AC083906.6-201ENST00000641366 219 ntBASIC14.97□□□□□ -0.01
CX3CL1P78423 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CX3CL1P78423 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms