Protein–RNA interactions for Protein: P49450

CENPA, Histone H3-like centromeric protein A, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPAP49450 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC16.85■□□□□ 0.29
CENPAP49450 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.85■□□□□ 0.29
CENPAP49450 AC128676.1-201ENST00000454392 318 ntBASIC16.85■□□□□ 0.29
CENPAP49450 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.85■□□□□ 0.29
CENPAP49450 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.85■□□□□ 0.29
CENPAP49450 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.85■□□□□ 0.29
CENPAP49450 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.85■□□□□ 0.29
CENPAP49450 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CENPAP49450 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
CENPAP49450 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CENPAP49450 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.84■□□□□ 0.29
CENPAP49450 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CENPAP49450 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CENPAP49450 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.84■□□□□ 0.29
CENPAP49450 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.84■□□□□ 0.29
CENPAP49450 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.84■□□□□ 0.29
CENPAP49450 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC16.84■□□□□ 0.29
CENPAP49450 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.84■□□□□ 0.29
CENPAP49450 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CENPAP49450 AC007613.1-201ENST00000572811 2597 ntBASIC16.84■□□□□ 0.29
CENPAP49450 HTR7P1-201ENST00000538670 1336 ntBASIC16.84■□□□□ 0.29
CENPAP49450 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.84■□□□□ 0.29
CENPAP49450 ANO7L1-203ENST00000602586 1720 ntBASIC16.84■□□□□ 0.29
CENPAP49450 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.84■□□□□ 0.29
CENPAP49450 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.84■□□□□ 0.29
CENPAP49450 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CENPAP49450 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CENPAP49450 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
CENPAP49450 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
CENPAP49450 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC16.83■□□□□ 0.28
CENPAP49450 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.83■□□□□ 0.28
CENPAP49450 AC005082.1-201ENST00000413042 2259 ntBASIC16.83■□□□□ 0.28
CENPAP49450 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.83■□□□□ 0.28
CENPAP49450 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.83■□□□□ 0.28
CENPAP49450 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.83■□□□□ 0.28
CENPAP49450 KRT8P41-201ENST00000533985 1514 ntBASIC16.83■□□□□ 0.28
CENPAP49450 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.83■□□□□ 0.28
CENPAP49450 AC009113.1-201ENST00000570267 2443 ntBASIC16.83■□□□□ 0.28
CENPAP49450 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.83■□□□□ 0.28
CENPAP49450 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.83■□□□□ 0.28
CENPAP49450 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CENPAP49450 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CENPAP49450 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CENPAP49450 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CENPAP49450 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CENPAP49450 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPAP49450 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPAP49450 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPAP49450 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPAP49450 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CENPAP49450 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms