Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC15.3■□□□□ 0.04
SNCAP37840 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC15.3■□□□□ 0.04
SNCAP37840 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.3■□□□□ 0.04
SNCAP37840 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 GATS-209ENST00000454084 1030 ntTSL 3 BASIC15.3■□□□□ 0.04
SNCAP37840 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 BET1L-207ENST00000529614 560 ntTSL 5 BASIC15.3■□□□□ 0.04
SNCAP37840 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SNCAP37840 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.3■□□□□ 0.04
SNCAP37840 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SNCAP37840 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.3■□□□□ 0.04
SNCAP37840 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 PFKL-212ENST00000628044 129 ntTSL 3 BASIC15.3■□□□□ 0.04
SNCAP37840 HLA-B-256ENST00000639848 1089 ntBASIC15.3■□□□□ 0.04
SNCAP37840 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SNCAP37840 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 SDHAP1-207ENST00000440850 2000 ntBASIC15.29■□□□□ 0.04
SNCAP37840 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.29■□□□□ 0.04
SNCAP37840 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.29■□□□□ 0.04
SNCAP37840 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SNCAP37840 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC15.29■□□□□ 0.04
SNCAP37840 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.29■□□□□ 0.04
SNCAP37840 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.29■□□□□ 0.04
SNCAP37840 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
SNCAP37840 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC15.29■□□□□ 0.04
SNCAP37840 TUBB8P6-201ENST00000436895 1288 ntBASIC15.29■□□□□ 0.04
SNCAP37840 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC15.29■□□□□ 0.04
SNCAP37840 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC15.29■□□□□ 0.04
SNCAP37840 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC15.29■□□□□ 0.04
SNCAP37840 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC15.29■□□□□ 0.04
SNCAP37840 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC15.29■□□□□ 0.04
SNCAP37840 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC15.29■□□□□ 0.04
SNCAP37840 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC15.29■□□□□ 0.04
SNCAP37840 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC15.29■□□□□ 0.04
SNCAP37840 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC15.29■□□□□ 0.04
SNCAP37840 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
SNCAP37840 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.29■□□□□ 0.04
SNCAP37840 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 GNAS-203ENST00000306120 1878 ntBASIC15.29■□□□□ 0.04
SNCAP37840 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SNCAP37840 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SNCAP37840 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC15.28■□□□□ 0.04
SNCAP37840 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SNCAP37840 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
SNCAP37840 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC15.28■□□□□ 0.04
SNCAP37840 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SNCAP37840 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC15.28■□□□□ 0.04
SNCAP37840 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC15.28■□□□□ 0.04
SNCAP37840 RHEB-204ENST00000472642 900 ntTSL 3 BASIC15.28■□□□□ 0.04
SNCAP37840 OR2A1-AS1-207ENST00000486094 819 ntBASIC15.28■□□□□ 0.04
SNCAP37840 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC15.28■□□□□ 0.04
SNCAP37840 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC15.28■□□□□ 0.04
SNCAP37840 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC15.28■□□□□ 0.04
SNCAP37840 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SNCAP37840 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.28■□□□□ 0.04
SNCAP37840 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms