Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.08■□□□□ 0.97
COL11A1P12107 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.08■□□□□ 0.97
COL11A1P12107 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL11A1P12107 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
COL11A1P12107 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC21.08■□□□□ 0.97
COL11A1P12107 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL11A1P12107 AL499627.1-201ENST00000569373 2188 ntBASIC21.08■□□□□ 0.97
COL11A1P12107 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL11A1P12107 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL11A1P12107 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL11A1P12107 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL11A1P12107 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.08■□□□□ 0.96
COL11A1P12107 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL11A1P12107 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.08■□□□□ 0.96
COL11A1P12107 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.08■□□□□ 0.96
COL11A1P12107 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL11A1P12107 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL11A1P12107 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL11A1P12107 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL11A1P12107 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
COL11A1P12107 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL11A1P12107 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL11A1P12107 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL11A1P12107 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL11A1P12107 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL11A1P12107 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL11A1P12107 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL11A1P12107 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL11A1P12107 AC023511.2-201ENST00000618803 211 ntBASIC21.07■□□□□ 0.96
COL11A1P12107 AL163051.1-201ENST00000569214 1512 ntBASIC21.07■□□□□ 0.96
COL11A1P12107 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.07■□□□□ 0.96
COL11A1P12107 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL11A1P12107 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
COL11A1P12107 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 RN7SL606P-201ENST00000472779 293 ntBASIC21.06■□□□□ 0.96
COL11A1P12107 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL11A1P12107 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.06■□□□□ 0.96
COL11A1P12107 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.06■□□□□ 0.96
COL11A1P12107 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 AC005332.7-201ENST00000614046 2005 ntBASIC21.06■□□□□ 0.96
COL11A1P12107 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.06■□□□□ 0.96
COL11A1P12107 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.06■□□□□ 0.96
COL11A1P12107 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
COL11A1P12107 AL022342.1-201ENST00000400363 863 ntBASIC21.06■□□□□ 0.96
COL11A1P12107 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC21.06■□□□□ 0.96
COL11A1P12107 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.06■□□□□ 0.96
COL11A1P12107 RNA5SP419-201ENST00000515908 135 ntBASIC21.06■□□□□ 0.96
COL11A1P12107 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC21.06■□□□□ 0.96
COL11A1P12107 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
COL11A1P12107 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.06■□□□□ 0.96
COL11A1P12107 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.06■□□□□ 0.96
COL11A1P12107 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
COL11A1P12107 HLA-A-201ENST00000376802 1334 ntBASIC21.06■□□□□ 0.96
COL11A1P12107 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL11A1P12107 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
COL11A1P12107 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
COL11A1P12107 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.05■□□□□ 0.96
COL11A1P12107 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.05■□□□□ 0.96
COL11A1P12107 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
COL11A1P12107 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 AF238378.1-201ENST00000526806 358 ntBASIC21.05■□□□□ 0.96
COL11A1P12107 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.05■□□□□ 0.96
COL11A1P12107 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.05■□□□□ 0.96
COL11A1P12107 AL121912.1-201ENST00000603683 238 ntBASIC21.05■□□□□ 0.96
COL11A1P12107 AL121772.3-201ENST00000610840 674 ntBASIC21.05■□□□□ 0.96
COL11A1P12107 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.05■□□□□ 0.96
COL11A1P12107 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.05■□□□□ 0.96
COL11A1P12107 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL11A1P12107 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.05■□□□□ 0.96
COL11A1P12107 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL11A1P12107 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.04■□□□□ 0.96
COL11A1P12107 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.04■□□□□ 0.96
COL11A1P12107 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.04■□□□□ 0.96
COL11A1P12107 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL11A1P12107 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL11A1P12107 LSM5-204ENST00000409909 740 ntTSL 2 BASIC21.04■□□□□ 0.96
COL11A1P12107 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.04■□□□□ 0.96
COL11A1P12107 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC21.04■□□□□ 0.96
COL11A1P12107 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL11A1P12107 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.04■□□□□ 0.96
COL11A1P12107 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
COL11A1P12107 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms