Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 AL390719.1-204ENST00000412397 1219 ntBASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 AC113410.3-201ENST00000623366 203 ntBASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TRIM55Q9BYV6 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRIM55Q9BYV6 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 AC073592.3-201ENST00000625118 1834 ntBASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 AP001412.1-201ENST00000608405 714 ntBASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 AC010331.1-201ENST00000611423 582 ntBASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM55Q9BYV6 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 AL162741.1-201ENST00000565563 1558 ntBASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 AL135905.2-201ENST00000584934 1404 ntBASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 MIR4785-201ENST00000585005 73 ntBASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM55Q9BYV6 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms