Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 SOX15-203ENST00000570788 1093 ntBASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 MIR4758-201ENST00000577688 71 ntBASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 POU5F1P3-201ENST00000428824 1078 ntBASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 AC092437.1-201ENST00000624794 1048 ntBASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 AC106820.2-201ENST00000563775 3264 ntBASIC18.11■□□□□ 0.49
CCDC28BQ9BUN5 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 KRT8P3-201ENST00000519669 1449 ntBASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 MIR5787-201ENST00000611784 55 ntBASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28BQ9BUN5 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms