Protein–RNA interactions for Protein: Q96QF0

RAB3IP, Rab-3A-interacting protein, humanhuman

Predicted RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3IPQ96QF0 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 TFP1-202ENST00000475455 1573 ntBASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 AL023806.1-201ENST00000603994 1649 ntBASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.16■□□□□ 0.5
RAB3IPQ96QF0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 AC022211.2-201ENST00000585075 2527 ntBASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 FLJ13224-201ENST00000313737 1514 ntBASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 AL121761.2-201ENST00000598007 1648 ntBASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RAB3IPQ96QF0 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
RAB3IPQ96QF0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
RAB3IPQ96QF0 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
RAB3IPQ96QF0 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
RAB3IPQ96QF0 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
RAB3IPQ96QF0 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 AC105020.6-201ENST00000621523 1217 ntBASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RAB3IPQ96QF0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms