Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS39Q96JC1 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS39Q96JC1 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS39Q96JC1 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS39Q96JC1 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS39Q96JC1 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS39Q96JC1 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS39Q96JC1 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VPS39Q96JC1 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VPS39Q96JC1 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS39Q96JC1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.69■□□□□ 0.58
VPS39Q96JC1 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
VPS39Q96JC1 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS39Q96JC1 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 NOC2LP1-202ENST00000452600 2235 ntBASIC18.69■□□□□ 0.58
VPS39Q96JC1 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
VPS39Q96JC1 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS39Q96JC1 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS39Q96JC1 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS39Q96JC1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.68■□□□□ 0.58
VPS39Q96JC1 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS39Q96JC1 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VPS39Q96JC1 RARRES2P10-201ENST00000564312 460 ntBASIC18.68■□□□□ 0.58
VPS39Q96JC1 AC011298.2-201ENST00000617989 482 ntBASIC18.68■□□□□ 0.58
VPS39Q96JC1 CR392000.1-201ENST00000624770 1228 ntBASIC18.68■□□□□ 0.58
VPS39Q96JC1 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS39Q96JC1 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS39Q96JC1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 ABALON-201ENST00000629058 1903 ntBASIC18.67■□□□□ 0.58
VPS39Q96JC1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 AC008040.2-201ENST00000461049 708 ntBASIC18.67■□□□□ 0.58
VPS39Q96JC1 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 RPPH1-201ENST00000516869 333 ntBASIC18.67■□□□□ 0.58
VPS39Q96JC1 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 AC073195.1-201ENST00000607241 877 ntBASIC18.67■□□□□ 0.58
VPS39Q96JC1 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 AL357033.4-201ENST00000617703 1807 ntBASIC18.67■□□□□ 0.58
VPS39Q96JC1 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS39Q96JC1 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS39Q96JC1 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS39Q96JC1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS39Q96JC1 CKBP1-201ENST00000565489 1086 ntBASIC18.66■□□□□ 0.58
VPS39Q96JC1 AF186192.3-201ENST00000583427 947 ntBASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 603.7 ms