Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 C2orf69P3-201ENST00000565542 1120 ntBASIC17.83■□□□□ 0.44
VMP1Q96GC9 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.83■□□□□ 0.44
VMP1Q96GC9 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 KRT8P9-201ENST00000558927 1449 ntBASIC17.82■□□□□ 0.44
VMP1Q96GC9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 PRSS44-201ENST00000515154 1146 ntBASIC17.82■□□□□ 0.44
VMP1Q96GC9 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VMP1Q96GC9 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VMP1Q96GC9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.81■□□□□ 0.44
VMP1Q96GC9 SDHAP1-207ENST00000440850 2000 ntBASIC17.81■□□□□ 0.44
VMP1Q96GC9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VMP1Q96GC9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.8■□□□□ 0.44
VMP1Q96GC9 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
VMP1Q96GC9 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.8■□□□□ 0.44
VMP1Q96GC9 ECEL1P3-201ENST00000427961 737 ntBASIC17.8■□□□□ 0.44
VMP1Q96GC9 TSPY21P-201ENST00000433481 731 ntBASIC17.8■□□□□ 0.44
VMP1Q96GC9 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VMP1Q96GC9 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.8■□□□□ 0.44
VMP1Q96GC9 AC097493.4-201ENST00000641197 219 ntBASIC17.8■□□□□ 0.44
VMP1Q96GC9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.8■□□□□ 0.44
VMP1Q96GC9 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
VMP1Q96GC9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms