Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AL162377.1-201ENST00000618844 1793 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AL158211.5-201ENST00000623583 2518 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AC112907.2-201ENST00000448639 330 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 MIR662-201ENST00000384847 95 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 PVRIG2P-201ENST00000435460 978 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SPDYE13P-201ENST00000445314 798 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AC128688.1-201ENST00000487626 519 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AC012313.10-201ENST00000623509 926 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AL358472.4-201ENST00000633140 710 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AL031432.5-201ENST00000641059 760 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 KRT8P8-201ENST00000434750 1448 ntBASIC5.74□□□□□ -1.49
SYNE1Q8NF91 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
SYNE1Q8NF91 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms