Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BEST3Q8N1M1 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
BEST3Q8N1M1 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.27■□□□□ 0.36
BEST3Q8N1M1 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BEST3Q8N1M1 AC034232.1-201ENST00000506026 1064 ntBASIC17.27■□□□□ 0.36
BEST3Q8N1M1 HYMAI.1-201ENST00000620949 238 ntBASIC17.27■□□□□ 0.36
BEST3Q8N1M1 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.27■□□□□ 0.36
BEST3Q8N1M1 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
BEST3Q8N1M1 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
BEST3Q8N1M1 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.27■□□□□ 0.35
BEST3Q8N1M1 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
BEST3Q8N1M1 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
BEST3Q8N1M1 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
BEST3Q8N1M1 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
BEST3Q8N1M1 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.27■□□□□ 0.35
BEST3Q8N1M1 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.35
BEST3Q8N1M1 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
BEST3Q8N1M1 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 RASA4DP-201ENST00000460726 1199 ntBASIC17.26■□□□□ 0.35
BEST3Q8N1M1 ZNF444P1-201ENST00000559497 298 ntBASIC17.26■□□□□ 0.35
BEST3Q8N1M1 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.26■□□□□ 0.35
BEST3Q8N1M1 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 AP000974.1-201ENST00000623909 2387 ntBASIC17.26■□□□□ 0.35
BEST3Q8N1M1 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
BEST3Q8N1M1 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.25■□□□□ 0.35
BEST3Q8N1M1 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.25■□□□□ 0.35
BEST3Q8N1M1 AC008556.1-201ENST00000610908 2040 ntBASIC17.25■□□□□ 0.35
BEST3Q8N1M1 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 AL109659.2-201ENST00000606809 1674 ntBASIC17.24■□□□□ 0.35
BEST3Q8N1M1 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
BEST3Q8N1M1 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms