Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.65■□□□□ 0.26
CLRN1P58418 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CLRN1P58418 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CLRN1P58418 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.64■□□□□ 0.26
CLRN1P58418 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.64■□□□□ 0.25
CLRN1P58418 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CLRN1P58418 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.64■□□□□ 0.25
CLRN1P58418 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CLRN1P58418 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.64■□□□□ 0.25
CLRN1P58418 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.64■□□□□ 0.25
CLRN1P58418 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
CLRN1P58418 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.64■□□□□ 0.25
CLRN1P58418 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.64■□□□□ 0.25
CLRN1P58418 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
CLRN1P58418 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.64■□□□□ 0.25
CLRN1P58418 MYC-208ENST00000641036 567 ntBASIC16.64■□□□□ 0.25
CLRN1P58418 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CLRN1P58418 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.64■□□□□ 0.25
CLRN1P58418 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
CLRN1P58418 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.64■□□□□ 0.25
CLRN1P58418 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.64■□□□□ 0.25
CLRN1P58418 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CLRN1P58418 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.64■□□□□ 0.25
CLRN1P58418 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.64■□□□□ 0.25
CLRN1P58418 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CLRN1P58418 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN1P58418 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CLRN1P58418 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 AL357033.4-201ENST00000617703 1807 ntBASIC16.63■□□□□ 0.25
CLRN1P58418 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
CLRN1P58418 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.63■□□□□ 0.25
CLRN1P58418 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CLRN1P58418 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.63■□□□□ 0.25
CLRN1P58418 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.63■□□□□ 0.25
CLRN1P58418 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CLRN1P58418 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
CLRN1P58418 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.63■□□□□ 0.25
CLRN1P58418 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.63■□□□□ 0.25
CLRN1P58418 MCCD1P1-208ENST00000445732 328 ntBASIC16.63■□□□□ 0.25
CLRN1P58418 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.63■□□□□ 0.25
CLRN1P58418 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CLRN1P58418 AP000525.1-201ENST00000608286 694 ntBASIC16.63■□□□□ 0.25
CLRN1P58418 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.63■□□□□ 0.25
CLRN1P58418 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.63■□□□□ 0.25
CLRN1P58418 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLRN1P58418 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CLRN1P58418 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.62■□□□□ 0.25
CLRN1P58418 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 AC005082.1-201ENST00000413042 2259 ntBASIC16.62■□□□□ 0.25
CLRN1P58418 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CLRN1P58418 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
CLRN1P58418 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CLRN1P58418 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CLRN1P58418 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.62■□□□□ 0.25
CLRN1P58418 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms