Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX2P58304 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VSX2P58304 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
VSX2P58304 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
VSX2P58304 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.82■□□□□ 0.44
VSX2P58304 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.82■□□□□ 0.44
VSX2P58304 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.82■□□□□ 0.44
VSX2P58304 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX2P58304 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX2P58304 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX2P58304 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VSX2P58304 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VSX2P58304 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.82■□□□□ 0.44
VSX2P58304 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
VSX2P58304 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.81■□□□□ 0.44
VSX2P58304 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.81■□□□□ 0.44
VSX2P58304 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VSX2P58304 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 KRT18P23-201ENST00000435622 1283 ntBASIC17.81■□□□□ 0.44
VSX2P58304 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.81■□□□□ 0.44
VSX2P58304 KRT18P35-201ENST00000510488 1269 ntBASIC17.81■□□□□ 0.44
VSX2P58304 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.81■□□□□ 0.44
VSX2P58304 LINC01238-205ENST00000567549 1107 ntBASIC17.81■□□□□ 0.44
VSX2P58304 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.81■□□□□ 0.44
VSX2P58304 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.81■□□□□ 0.44
VSX2P58304 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.81■□□□□ 0.44
VSX2P58304 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 AC112497.1-201ENST00000624824 639 ntBASIC17.81■□□□□ 0.44
VSX2P58304 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.81■□□□□ 0.44
VSX2P58304 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
VSX2P58304 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.81■□□□□ 0.44
VSX2P58304 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
VSX2P58304 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VSX2P58304 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VSX2P58304 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.8■□□□□ 0.44
VSX2P58304 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
VSX2P58304 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 AL357033.4-201ENST00000617703 1807 ntBASIC17.8■□□□□ 0.44
VSX2P58304 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 AC006333.2-201ENST00000607957 2099 ntBASIC17.8■□□□□ 0.44
VSX2P58304 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
VSX2P58304 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.8■□□□□ 0.44
VSX2P58304 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.8■□□□□ 0.44
VSX2P58304 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.8■□□□□ 0.44
VSX2P58304 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.8■□□□□ 0.44
VSX2P58304 AL359075.1-203ENST00000462729 1002 ntBASIC17.8■□□□□ 0.44
VSX2P58304 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.8■□□□□ 0.44
VSX2P58304 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.8■□□□□ 0.44
VSX2P58304 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.8■□□□□ 0.44
VSX2P58304 AL445228.2-201ENST00000605589 952 ntBASIC17.8■□□□□ 0.44
VSX2P58304 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 AC018445.3-201ENST00000624177 1945 ntBASIC17.8■□□□□ 0.44
VSX2P58304 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VSX2P58304 AC026471.1-201ENST00000564629 3026 ntBASIC17.8■□□□□ 0.44
VSX2P58304 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.79■□□□□ 0.44
VSX2P58304 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 MTMR9LP-203ENST00000426597 1545 ntBASIC17.79■□□□□ 0.44
VSX2P58304 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
VSX2P58304 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.79■□□□□ 0.44
VSX2P58304 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 ARMC10P1-201ENST00000313754 855 ntBASIC17.79■□□□□ 0.44
VSX2P58304 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.79■□□□□ 0.44
VSX2P58304 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.79■□□□□ 0.44
VSX2P58304 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.79■□□□□ 0.44
VSX2P58304 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.79■□□□□ 0.44
VSX2P58304 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
VSX2P58304 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
VSX2P58304 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX2P58304 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms