Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
FOXA3P55318 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
FOXA3P55318 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA3P55318 AL355472.2-201ENST00000422958 438 ntBASIC13.99□□□□□ -0.17
FOXA3P55318 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC13.99□□□□□ -0.17
FOXA3P55318 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC13.99□□□□□ -0.17
FOXA3P55318 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC13.99□□□□□ -0.17
FOXA3P55318 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA3P55318 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA3P55318 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.99□□□□□ -0.17
FOXA3P55318 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA3P55318 MOK-233ENST00000524214 1539 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA3P55318 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
FOXA3P55318 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA3P55318 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA3P55318 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 GOLGA6L3-201ENST00000507199 1679 ntBASIC13.98□□□□□ -0.17
FOXA3P55318 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA3P55318 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA3P55318 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC13.98□□□□□ -0.17
FOXA3P55318 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA3P55318 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC13.98□□□□□ -0.17
FOXA3P55318 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 AC138028.4-201ENST00000564984 1845 ntBASIC13.98□□□□□ -0.17
FOXA3P55318 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
FOXA3P55318 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
FOXA3P55318 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA3P55318 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
FOXA3P55318 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA3P55318 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA3P55318 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
FOXA3P55318 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
FOXA3P55318 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
FOXA3P55318 AC135776.1-201ENST00000319817 2481 ntBASIC13.97□□□□□ -0.17
FOXA3P55318 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
FOXA3P55318 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA3P55318 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
FOXA3P55318 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA3P55318 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms