Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCPP55072 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
VCPP55072 AL022342.1-201ENST00000400363 863 ntBASIC19.92■□□□□ 0.78
VCPP55072 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
VCPP55072 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.92■□□□□ 0.78
VCPP55072 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.92■□□□□ 0.78
VCPP55072 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.92■□□□□ 0.78
VCPP55072 ZNF444P1-201ENST00000559497 298 ntBASIC19.92■□□□□ 0.78
VCPP55072 AC111152.3-201ENST00000569699 673 ntBASIC19.92■□□□□ 0.78
VCPP55072 MIR3652-201ENST00000579335 131 ntBASIC19.92■□□□□ 0.78
VCPP55072 AL023803.3-201ENST00000615559 522 ntBASIC19.92■□□□□ 0.78
VCPP55072 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VCPP55072 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
VCPP55072 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.92■□□□□ 0.78
VCPP55072 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
VCPP55072 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCPP55072 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VCPP55072 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCPP55072 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.91■□□□□ 0.78
VCPP55072 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.91■□□□□ 0.78
VCPP55072 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
VCPP55072 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCPP55072 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.91■□□□□ 0.78
VCPP55072 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.91■□□□□ 0.78
VCPP55072 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
VCPP55072 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
VCPP55072 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCPP55072 AC112907.2-201ENST00000448639 330 ntBASIC19.91■□□□□ 0.78
VCPP55072 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.91■□□□□ 0.78
VCPP55072 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.91■□□□□ 0.78
VCPP55072 UNC93B7-201ENST00000509439 705 ntBASIC19.91■□□□□ 0.78
VCPP55072 NPAP1P7-201ENST00000613027 823 ntBASIC19.91■□□□□ 0.78
VCPP55072 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCPP55072 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.91■□□□□ 0.78
VCPP55072 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCPP55072 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCPP55072 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.91■□□□□ 0.78
VCPP55072 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCPP55072 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCPP55072 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
VCPP55072 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.9■□□□□ 0.78
VCPP55072 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.9■□□□□ 0.78
VCPP55072 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.9■□□□□ 0.78
VCPP55072 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.9■□□□□ 0.78
VCPP55072 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
VCPP55072 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.9■□□□□ 0.78
VCPP55072 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.9■□□□□ 0.78
VCPP55072 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.9■□□□□ 0.78
VCPP55072 CKBP1-201ENST00000565489 1086 ntBASIC19.9■□□□□ 0.78
VCPP55072 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
VCPP55072 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
VCPP55072 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VCPP55072 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
VCPP55072 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.9■□□□□ 0.78
VCPP55072 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.9■□□□□ 0.78
VCPP55072 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.9■□□□□ 0.78
VCPP55072 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VCPP55072 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCPP55072 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCPP55072 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCPP55072 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCPP55072 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCPP55072 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
VCPP55072 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCPP55072 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VCPP55072 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCPP55072 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VCPP55072 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.89■□□□□ 0.77
VCPP55072 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.89■□□□□ 0.77
VCPP55072 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
VCPP55072 KRT8P41-201ENST00000533985 1514 ntBASIC19.89■□□□□ 0.77
VCPP55072 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.89■□□□□ 0.77
VCPP55072 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCPP55072 AL512604.3-201ENST00000569583 964 ntBASIC19.89■□□□□ 0.77
VCPP55072 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms