Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.78■□□□□ 0.44
MSX2P35548 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.78■□□□□ 0.44
MSX2P35548 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.78■□□□□ 0.44
MSX2P35548 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
MSX2P35548 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.78■□□□□ 0.44
MSX2P35548 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
MSX2P35548 RCC2P6-201ENST00000526625 1557 ntBASIC17.78■□□□□ 0.44
MSX2P35548 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.78■□□□□ 0.44
MSX2P35548 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
MSX2P35548 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
MSX2P35548 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.77■□□□□ 0.44
MSX2P35548 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
MSX2P35548 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.77■□□□□ 0.44
MSX2P35548 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.77■□□□□ 0.44
MSX2P35548 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
MSX2P35548 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
MSX2P35548 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
MSX2P35548 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
MSX2P35548 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.77■□□□□ 0.44
MSX2P35548 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
MSX2P35548 TSPY21P-201ENST00000433481 731 ntBASIC17.77■□□□□ 0.44
MSX2P35548 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.77■□□□□ 0.44
MSX2P35548 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.77■□□□□ 0.44
MSX2P35548 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.77■□□□□ 0.44
MSX2P35548 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.77■□□□□ 0.44
MSX2P35548 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.77■□□□□ 0.44
MSX2P35548 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.77■□□□□ 0.44
MSX2P35548 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.77■□□□□ 0.44
MSX2P35548 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
MSX2P35548 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSX2P35548 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSX2P35548 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSX2P35548 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
MSX2P35548 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSX2P35548 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSX2P35548 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSX2P35548 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.77■□□□□ 0.43
MSX2P35548 BCL2-203ENST00000589955 5011 ntBASIC17.77■□□□□ 0.43
MSX2P35548 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
MSX2P35548 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
MSX2P35548 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.77■□□□□ 0.43
MSX2P35548 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
MSX2P35548 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
MSX2P35548 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSX2P35548 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
MSX2P35548 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
MSX2P35548 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
MSX2P35548 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
MSX2P35548 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 AC108860.2-201ENST00000562760 2183 ntBASIC17.76■□□□□ 0.43
MSX2P35548 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
MSX2P35548 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
MSX2P35548 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.76■□□□□ 0.43
MSX2P35548 AC133552.2-202ENST00000575694 574 ntBASIC17.76■□□□□ 0.43
MSX2P35548 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.76■□□□□ 0.43
MSX2P35548 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.76■□□□□ 0.43
MSX2P35548 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.76■□□□□ 0.43
MSX2P35548 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
MSX2P35548 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
MSX2P35548 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSX2P35548 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
MSX2P35548 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX2P35548 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX2P35548 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX2P35548 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX2P35548 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX2P35548 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
MSX2P35548 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX2P35548 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX2P35548 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms