Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.62■□□□□ 0.73
BDNFP23560 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
BDNFP23560 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
BDNFP23560 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
BDNFP23560 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.61■□□□□ 0.73
BDNFP23560 AL136038.3-201ENST00000561909 1096 ntBASIC19.61■□□□□ 0.73
BDNFP23560 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
BDNFP23560 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.61■□□□□ 0.73
BDNFP23560 AP000550.4-202ENST00000639755 178 ntBASIC19.61■□□□□ 0.73
BDNFP23560 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
BDNFP23560 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
BDNFP23560 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
BDNFP23560 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
BDNFP23560 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
BDNFP23560 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BDNFP23560 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.6■□□□□ 0.73
BDNFP23560 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
BDNFP23560 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
BDNFP23560 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.6■□□□□ 0.73
BDNFP23560 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.6■□□□□ 0.73
BDNFP23560 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.6■□□□□ 0.73
BDNFP23560 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.6■□□□□ 0.73
BDNFP23560 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
BDNFP23560 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
BDNFP23560 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.6■□□□□ 0.73
BDNFP23560 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.6■□□□□ 0.73
BDNFP23560 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
BDNFP23560 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
BDNFP23560 KRT8P50-201ENST00000562022 1438 ntBASIC19.59■□□□□ 0.73
BDNFP23560 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 IER3-202ENST00000376377 1350 ntBASIC19.59■□□□□ 0.73
BDNFP23560 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
BDNFP23560 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.59■□□□□ 0.73
BDNFP23560 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
BDNFP23560 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.59■□□□□ 0.73
BDNFP23560 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.59■□□□□ 0.73
BDNFP23560 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.59■□□□□ 0.73
BDNFP23560 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.59■□□□□ 0.73
BDNFP23560 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
BDNFP23560 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
BDNFP23560 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BDNFP23560 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
BDNFP23560 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
BDNFP23560 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BDNFP23560 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
BDNFP23560 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.58■□□□□ 0.73
BDNFP23560 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
BDNFP23560 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BDNFP23560 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BDNFP23560 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BDNFP23560 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.58■□□□□ 0.72
BDNFP23560 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.58■□□□□ 0.72
BDNFP23560 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BDNFP23560 UPK3BP1-201ENST00000428678 509 ntBASIC19.58■□□□□ 0.72
BDNFP23560 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms