Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 NKILA-202ENST00000614771 2598 ntBASIC14.01□□□□□ -0.17
HLA-DQA1P01909 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 VMO1-204ENST00000441199 741 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 AC104187.1-201ENST00000607510 612 ntBASIC14.01□□□□□ -0.17
HLA-DQA1P01909 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
HLA-DQA1P01909 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 AC011270.2-201ENST00000624293 2550 ntBASIC14□□□□□ -0.17
HLA-DQA1P01909 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC14□□□□□ -0.17
HLA-DQA1P01909 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DQA1P01909 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC14□□□□□ -0.17
HLA-DQA1P01909 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC14□□□□□ -0.17
HLA-DQA1P01909 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HLA-DQA1P01909 AC104417.2-201ENST00000562989 1793 ntBASIC14□□□□□ -0.17
HLA-DQA1P01909 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC14□□□□□ -0.17
HLA-DQA1P01909 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HLA-DQA1P01909 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14□□□□□ -0.17
HLA-DQA1P01909 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 AC018553.1-201ENST00000616682 1458 ntBASIC13.99□□□□□ -0.17
HLA-DQA1P01909 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 AC018695.7-201ENST00000624587 2492 ntBASIC13.99□□□□□ -0.17
HLA-DQA1P01909 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 KRT18P20-201ENST00000548986 1279 ntBASIC13.99□□□□□ -0.17
HLA-DQA1P01909 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 AC011676.5-201ENST00000624864 2660 ntBASIC13.99□□□□□ -0.17
HLA-DQA1P01909 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms