Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.84■□□□□ 0.45
SEMA3DO95025 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.84■□□□□ 0.45
SEMA3DO95025 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.84■□□□□ 0.45
SEMA3DO95025 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 AC073592.3-201ENST00000625118 1834 ntBASIC17.84■□□□□ 0.45
SEMA3DO95025 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
SEMA3DO95025 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SEMA3DO95025 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.83■□□□□ 0.45
SEMA3DO95025 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
SEMA3DO95025 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SEMA3DO95025 AC079598.2-202ENST00000546624 1451 ntBASIC17.83■□□□□ 0.45
SEMA3DO95025 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.83■□□□□ 0.45
SEMA3DO95025 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
SEMA3DO95025 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
SEMA3DO95025 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SEMA3DO95025 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
SEMA3DO95025 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.83■□□□□ 0.44
SEMA3DO95025 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.83■□□□□ 0.44
SEMA3DO95025 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SEMA3DO95025 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.83■□□□□ 0.44
SEMA3DO95025 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.83■□□□□ 0.44
SEMA3DO95025 MIR4497-201ENST00000583208 89 ntBASIC17.83■□□□□ 0.44
SEMA3DO95025 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
SEMA3DO95025 AP000525.1-201ENST00000608286 694 ntBASIC17.83■□□□□ 0.44
SEMA3DO95025 AL023803.3-201ENST00000615559 522 ntBASIC17.83■□□□□ 0.44
SEMA3DO95025 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.83■□□□□ 0.44
SEMA3DO95025 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SEMA3DO95025 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 GPAT2P1-201ENST00000444924 1672 ntBASIC17.83■□□□□ 0.44
SEMA3DO95025 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
SEMA3DO95025 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.83■□□□□ 0.44
SEMA3DO95025 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.83■□□□□ 0.44
SEMA3DO95025 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 AC090164.3-201ENST00000610780 2143 ntBASIC17.83■□□□□ 0.44
SEMA3DO95025 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SEMA3DO95025 LTB4R2-202ENST00000528054 3092 ntBASIC17.83■□□□□ 0.44
SEMA3DO95025 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.82■□□□□ 0.44
SEMA3DO95025 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.82■□□□□ 0.44
SEMA3DO95025 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
SEMA3DO95025 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SEMA3DO95025 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.82■□□□□ 0.44
SEMA3DO95025 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
SEMA3DO95025 TSPY17P-201ENST00000450329 467 ntBASIC17.82■□□□□ 0.44
SEMA3DO95025 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.82■□□□□ 0.44
SEMA3DO95025 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SEMA3DO95025 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SEMA3DO95025 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SEMA3DO95025 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SEMA3DO95025 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SEMA3DO95025 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.81■□□□□ 0.44
SEMA3DO95025 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
SEMA3DO95025 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.81■□□□□ 0.44
SEMA3DO95025 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 AC008556.1-201ENST00000610908 2040 ntBASIC17.81■□□□□ 0.44
SEMA3DO95025 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.81■□□□□ 0.44
SEMA3DO95025 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.81■□□□□ 0.44
SEMA3DO95025 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.81■□□□□ 0.44
SEMA3DO95025 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.81■□□□□ 0.44
SEMA3DO95025 AL355075.4-201ENST00000554988 638 ntBASIC17.81■□□□□ 0.44
SEMA3DO95025 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.81■□□□□ 0.44
SEMA3DO95025 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.81■□□□□ 0.44
SEMA3DO95025 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SEMA3DO95025 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SEMA3DO95025 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SEMA3DO95025 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms