Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS4BO75351 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS4BO75351 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VPS4BO75351 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VPS4BO75351 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS4BO75351 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
VPS4BO75351 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 AC113347.1-201ENST00000413321 391 ntBASIC18.27■□□□□ 0.52
VPS4BO75351 AL137013.1-201ENST00000432946 1228 ntBASIC18.27■□□□□ 0.52
VPS4BO75351 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS4BO75351 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS4BO75351 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS4BO75351 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.27■□□□□ 0.51
VPS4BO75351 LINC01568-207ENST00000641790 1380 ntBASIC18.27■□□□□ 0.51
VPS4BO75351 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS4BO75351 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS4BO75351 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS4BO75351 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS4BO75351 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS4BO75351 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS4BO75351 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
VPS4BO75351 AC026471.1-201ENST00000564629 3026 ntBASIC18.26■□□□□ 0.51
VPS4BO75351 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS4BO75351 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
VPS4BO75351 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS4BO75351 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS4BO75351 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS4BO75351 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS4BO75351 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS4BO75351 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS4BO75351 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS4BO75351 C1QL1P1-201ENST00000568105 661 ntBASIC18.26■□□□□ 0.51
VPS4BO75351 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS4BO75351 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.26■□□□□ 0.51
VPS4BO75351 HLA-A-209ENST00000638375 975 ntBASIC18.26■□□□□ 0.51
VPS4BO75351 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS4BO75351 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
VPS4BO75351 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS4BO75351 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS4BO75351 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS4BO75351 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
VPS4BO75351 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS4BO75351 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
VPS4BO75351 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VPS4BO75351 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS4BO75351 NOC2LP2-201ENST00000407594 1944 ntBASIC18.25■□□□□ 0.51
VPS4BO75351 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
VPS4BO75351 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
VPS4BO75351 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS4BO75351 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
VPS4BO75351 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.25■□□□□ 0.51
VPS4BO75351 KRT18P57-201ENST00000443599 1254 ntBASIC18.25■□□□□ 0.51
VPS4BO75351 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.25■□□□□ 0.51
VPS4BO75351 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.25■□□□□ 0.51
VPS4BO75351 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 AC087388.1-201ENST00000571370 1112 ntBASIC18.25■□□□□ 0.51
VPS4BO75351 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
VPS4BO75351 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS4BO75351 AC073195.1-201ENST00000607241 877 ntBASIC18.25■□□□□ 0.51
VPS4BO75351 AC004264.1-201ENST00000608354 794 ntBASIC18.25■□□□□ 0.51
VPS4BO75351 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS4BO75351 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS4BO75351 HEIH-201ENST00000623091 1652 ntBASIC18.25■□□□□ 0.51
VPS4BO75351 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
VPS4BO75351 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
VPS4BO75351 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS4BO75351 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 KRT18P22-201ENST00000402024 1347 ntBASIC18.24■□□□□ 0.51
VPS4BO75351 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms