Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
TRAV1-1A0A0B4J248 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
TRAV1-1A0A0B4J248 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.55□□□□□ -0.08
TRAV1-1A0A0B4J248 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
TRAV1-1A0A0B4J248 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
TRAV1-1A0A0B4J248 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 AC123595.1-201ENST00000440769 1046 ntBASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 SERP1-205ENST00000487153 657 ntTSL 4 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 BRI3-207ENST00000539286 699 ntTSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 AP006587.1-201ENST00000534129 1502 ntBASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRAV1-1A0A0B4J248 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 AC073210.2-201ENST00000430369 194 ntBASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 TSPY23P-201ENST00000440136 739 ntBASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRAV1-1A0A0B4J248 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRAV1-1A0A0B4J248 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms