Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 AL499627.1-201ENST00000569373 2188 ntBASIC19.29■□□□□ 0.68
PCDH9Q9HC56 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 AC026471.1-201ENST00000564629 3026 ntBASIC19.28■□□□□ 0.68
PCDH9Q9HC56 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 AC018470.1-201ENST00000624790 3129 ntBASIC19.28■□□□□ 0.68
PCDH9Q9HC56 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 NOC2LP2-201ENST00000407594 1944 ntBASIC19.28■□□□□ 0.68
PCDH9Q9HC56 LETM1P2-201ENST00000597330 2178 ntBASIC19.28■□□□□ 0.68
PCDH9Q9HC56 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 AP000692.2-201ENST00000608391 879 ntBASIC19.28■□□□□ 0.68
PCDH9Q9HC56 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDH9Q9HC56 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 DGCR10-201ENST00000609839 495 ntBASIC19.27■□□□□ 0.68
PCDH9Q9HC56 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDH9Q9HC56 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PCDH9Q9HC56 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.27■□□□□ 0.67
PCDH9Q9HC56 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PCDH9Q9HC56 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.27■□□□□ 0.67
PCDH9Q9HC56 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PCDH9Q9HC56 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms