Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 AC026396.1-201ENST00000419388 421 ntBASIC18.16■□□□□ 0.5
LMX1AQ8TE12 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 AC068587.9-201ENST00000641814 219 ntBASIC18.16■□□□□ 0.5
LMX1AQ8TE12 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 AC007952.6-201ENST00000573168 2673 ntBASIC18.16■□□□□ 0.5
LMX1AQ8TE12 AC003957.1-201ENST00000625108 2673 ntBASIC18.16■□□□□ 0.5
LMX1AQ8TE12 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 Z83836.1-201ENST00000624605 1642 ntBASIC18.15■□□□□ 0.5
LMX1AQ8TE12 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1AQ8TE12 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.14■□□□□ 0.5
LMX1AQ8TE12 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LMX1AQ8TE12 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.14■□□□□ 0.5
LMX1AQ8TE12 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 PVRIG2P-201ENST00000435460 978 ntBASIC18.14■□□□□ 0.49
LMX1AQ8TE12 AP003733.1-201ENST00000491725 852 ntBASIC18.14■□□□□ 0.49
LMX1AQ8TE12 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1AQ8TE12 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.13■□□□□ 0.49
LMX1AQ8TE12 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.13■□□□□ 0.49
LMX1AQ8TE12 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms