Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP38Q8NB14 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
USP38Q8NB14 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
USP38Q8NB14 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.79■□□□□ 0.92
USP38Q8NB14 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.79■□□□□ 0.92
USP38Q8NB14 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.79■□□□□ 0.92
USP38Q8NB14 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP38Q8NB14 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.78■□□□□ 0.92
USP38Q8NB14 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.78■□□□□ 0.92
USP38Q8NB14 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
USP38Q8NB14 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.78■□□□□ 0.92
USP38Q8NB14 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.78■□□□□ 0.92
USP38Q8NB14 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
USP38Q8NB14 AL671883.3-201ENST00000603274 991 ntBASIC20.78■□□□□ 0.92
USP38Q8NB14 AL031008.1-201ENST00000619963 541 ntBASIC20.78■□□□□ 0.92
USP38Q8NB14 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
USP38Q8NB14 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.78■□□□□ 0.92
USP38Q8NB14 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
USP38Q8NB14 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.78■□□□□ 0.92
USP38Q8NB14 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP38Q8NB14 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.77■□□□□ 0.92
USP38Q8NB14 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
USP38Q8NB14 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.77■□□□□ 0.92
USP38Q8NB14 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.77■□□□□ 0.92
USP38Q8NB14 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP38Q8NB14 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
USP38Q8NB14 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
USP38Q8NB14 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
USP38Q8NB14 AC092329.2-201ENST00000598402 547 ntBASIC20.77■□□□□ 0.92
USP38Q8NB14 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP38Q8NB14 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP38Q8NB14 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.77■□□□□ 0.92
USP38Q8NB14 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.77■□□□□ 0.92
USP38Q8NB14 LINC01311-201ENST00000565162 1445 ntBASIC20.77■□□□□ 0.91
USP38Q8NB14 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
USP38Q8NB14 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USP38Q8NB14 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
USP38Q8NB14 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
USP38Q8NB14 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
USP38Q8NB14 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.76■□□□□ 0.91
USP38Q8NB14 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.76■□□□□ 0.91
USP38Q8NB14 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
USP38Q8NB14 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
USP38Q8NB14 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.76■□□□□ 0.91
USP38Q8NB14 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.76■□□□□ 0.91
USP38Q8NB14 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.76■□□□□ 0.91
USP38Q8NB14 AC034232.1-201ENST00000506026 1064 ntBASIC20.76■□□□□ 0.91
USP38Q8NB14 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.76■□□□□ 0.91
USP38Q8NB14 AC104692.2-201ENST00000603054 253 ntBASIC20.76■□□□□ 0.91
USP38Q8NB14 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.76■□□□□ 0.91
USP38Q8NB14 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.76■□□□□ 0.91
USP38Q8NB14 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP38Q8NB14 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.76■□□□□ 0.91
USP38Q8NB14 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.76■□□□□ 0.91
USP38Q8NB14 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
USP38Q8NB14 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.76■□□□□ 0.91
USP38Q8NB14 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
USP38Q8NB14 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms