Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.29■□□□□ 0.68
NPAS3Q8IXF0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 IGHGP-201ENST00000390555 1178 ntBASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.28■□□□□ 0.68
NPAS3Q8IXF0 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 AL592071.1-201ENST00000611956 408 ntBASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.27■□□□□ 0.68
NPAS3Q8IXF0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPAS3Q8IXF0 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPAS3Q8IXF0 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 AP002469.2-201ENST00000531724 424 ntBASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 Z69720.1-201ENST00000601483 472 ntBASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 AC099336.1-202ENST00000602961 463 ntBASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
NPAS3Q8IXF0 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS3Q8IXF0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms