Protein–RNA interactions for Protein: Q5SRH9

TTC39A, Tetratricopeptide repeat protein 39A, humanhuman

Predictions only

Length 613 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39AQ5SRH9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 AC104390.1-201ENST00000555663 520 ntBASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 DFFB-212ENST00000625756 649 ntTSL 5 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 AL157888.1-201ENST00000631930 593 ntBASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
TTC39AQ5SRH9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 CLN6-204ENST00000564752 900 ntTSL 3 BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 MIR3917-201ENST00000580971 93 ntBASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TTC39AQ5SRH9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 AC010240.3-201ENST00000607688 395 ntBASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TTC39AQ5SRH9 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 LINC01311-201ENST00000565162 1445 ntBASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 HYMAI.1-201ENST00000620949 238 ntBASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 CYP51A1P1-201ENST00000492267 1507 ntBASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC22.66■■□□□ 1.22
TTC39AQ5SRH9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
TTC39AQ5SRH9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms