Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 ABHD17AP1-201ENST00000358206 933 ntBASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 NUDT16P1-203ENST00000513809 620 ntBASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 SLC25A1P4-201ENST00000567977 778 ntBASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 AP001412.1-201ENST00000608405 714 ntBASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 AC113410.3-201ENST00000623366 203 ntBASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC40Q4G0X9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 AL499627.1-201ENST00000569373 2188 ntBASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 AC012618.2-201ENST00000428058 849 ntBASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC40Q4G0X9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC40Q4G0X9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC40Q4G0X9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 AC233702.5-201ENST00000584107 538 ntBASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 AL049637.2-201ENST00000641778 930 ntBASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC40Q4G0X9 AL357033.4-201ENST00000617703 1807 ntBASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms