Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.71■□□□□ 0.43
RAE1P78406 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RAE1P78406 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.71■□□□□ 0.43
RAE1P78406 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RAE1P78406 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RAE1P78406 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RAE1P78406 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
RAE1P78406 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
RAE1P78406 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
RAE1P78406 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.71■□□□□ 0.43
RAE1P78406 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
RAE1P78406 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
RAE1P78406 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
RAE1P78406 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.71■□□□□ 0.42
RAE1P78406 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 AL162741.1-201ENST00000565563 1558 ntBASIC17.7■□□□□ 0.42
RAE1P78406 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
RAE1P78406 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
RAE1P78406 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 NOC2LP1-202ENST00000452600 2235 ntBASIC17.7■□□□□ 0.42
RAE1P78406 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
RAE1P78406 AL390955.1-201ENST00000428694 934 ntBASIC17.7■□□□□ 0.42
RAE1P78406 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.7■□□□□ 0.42
RAE1P78406 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.7■□□□□ 0.42
RAE1P78406 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.7■□□□□ 0.42
RAE1P78406 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.7■□□□□ 0.42
RAE1P78406 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 MIR4785-201ENST00000585005 73 ntBASIC17.7■□□□□ 0.42
RAE1P78406 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.7■□□□□ 0.42
RAE1P78406 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
RAE1P78406 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.7■□□□□ 0.42
RAE1P78406 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.7■□□□□ 0.42
RAE1P78406 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.7■□□□□ 0.42
RAE1P78406 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RAE1P78406 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
RAE1P78406 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
RAE1P78406 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
RAE1P78406 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.69■□□□□ 0.42
RAE1P78406 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.69■□□□□ 0.42
RAE1P78406 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.69■□□□□ 0.42
RAE1P78406 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.69■□□□□ 0.42
RAE1P78406 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 SNORA78-201ENST00000459373 127 ntBASIC17.69■□□□□ 0.42
RAE1P78406 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
RAE1P78406 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.69■□□□□ 0.42
RAE1P78406 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
RAE1P78406 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.69■□□□□ 0.42
RAE1P78406 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.69■□□□□ 0.42
RAE1P78406 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.69■□□□□ 0.42
RAE1P78406 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RAE1P78406 AC135776.1-201ENST00000319817 2481 ntBASIC17.69■□□□□ 0.42
RAE1P78406 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RAE1P78406 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.68■□□□□ 0.42
RAE1P78406 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RAE1P78406 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
RAE1P78406 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.68■□□□□ 0.42
RAE1P78406 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RAE1P78406 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.68■□□□□ 0.42
RAE1P78406 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.68■□□□□ 0.42
RAE1P78406 AL355075.4-201ENST00000554988 638 ntBASIC17.68■□□□□ 0.42
RAE1P78406 FITM1-202ENST00000559294 800 ntBASIC17.68■□□□□ 0.42
RAE1P78406 KRT8P50-201ENST00000562022 1438 ntBASIC17.68■□□□□ 0.42
RAE1P78406 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RAE1P78406 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.68■□□□□ 0.42
RAE1P78406 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms