Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CDX1P47902 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC15.22■□□□□ 0.03
CDX1P47902 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.22■□□□□ 0.03
CDX1P47902 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 GOLGA6L3-201ENST00000507199 1679 ntBASIC15.22■□□□□ 0.03
CDX1P47902 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDX1P47902 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 TREX1-205ENST00000625293 1783 ntBASIC15.21■□□□□ 0.03
CDX1P47902 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC15.21■□□□□ 0.03
CDX1P47902 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC15.21■□□□□ 0.03
CDX1P47902 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
CDX1P47902 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CDX1P47902 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 TSPY7P-201ENST00000431358 1114 ntBASIC15.21■□□□□ 0.03
CDX1P47902 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 PENK-204ENST00000518770 863 ntTSL 2 BASIC15.21■□□□□ 0.03
CDX1P47902 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC15.21■□□□□ 0.03
CDX1P47902 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
CDX1P47902 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC15.21■□□□□ 0.03
CDX1P47902 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC15.21■□□□□ 0.03
CDX1P47902 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC15.21■□□□□ 0.03
CDX1P47902 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CDX1P47902 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDX1P47902 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC15.21■□□□□ 0.03
CDX1P47902 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CDX1P47902 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
CDX1P47902 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.21■□□□□ 0.03
CDX1P47902 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDX1P47902 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDX1P47902 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CDX1P47902 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDX1P47902 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.21■□□□□ 0.02
CDX1P47902 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.21■□□□□ 0.02
CDX1P47902 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.2■□□□□ 0.02
CDX1P47902 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CDX1P47902 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
CDX1P47902 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CDX1P47902 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 NIFKP9-201ENST00000419265 221 ntBASIC15.2■□□□□ 0.02
CDX1P47902 AL355355.2-201ENST00000442321 338 ntBASIC15.2■□□□□ 0.02
CDX1P47902 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.2■□□□□ 0.02
CDX1P47902 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.2■□□□□ 0.02
CDX1P47902 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC15.2■□□□□ 0.02
CDX1P47902 C1QL1P1-201ENST00000568105 661 ntBASIC15.2■□□□□ 0.02
CDX1P47902 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC15.2■□□□□ 0.02
CDX1P47902 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.2■□□□□ 0.02
CDX1P47902 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CDX1P47902 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC15.2■□□□□ 0.02
CDX1P47902 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.2■□□□□ 0.02
CDX1P47902 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CDX1P47902 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDX1P47902 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.19■□□□□ 0.02
CDX1P47902 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CDX1P47902 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.19■□□□□ 0.02
CDX1P47902 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
CDX1P47902 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CDX1P47902 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.19■□□□□ 0.02
CDX1P47902 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDX1P47902 SIRPAP1-201ENST00000448467 1770 ntBASIC15.19■□□□□ 0.02
CDX1P47902 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.19■□□□□ 0.02
CDX1P47902 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CDX1P47902 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms