Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.1■□□□□ 0.49
HNF4AP41235 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.1■□□□□ 0.49
HNF4AP41235 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.1■□□□□ 0.49
HNF4AP41235 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.1■□□□□ 0.49
HNF4AP41235 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.1■□□□□ 0.49
HNF4AP41235 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HNF4AP41235 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.09■□□□□ 0.49
HNF4AP41235 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HNF4AP41235 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HNF4AP41235 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.09■□□□□ 0.49
HNF4AP41235 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.09■□□□□ 0.49
HNF4AP41235 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HNF4AP41235 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HNF4AP41235 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HNF4AP41235 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HNF4AP41235 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
HNF4AP41235 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HNF4AP41235 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
HNF4AP41235 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HNF4AP41235 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.08■□□□□ 0.49
HNF4AP41235 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.08■□□□□ 0.49
HNF4AP41235 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.08■□□□□ 0.49
HNF4AP41235 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
HNF4AP41235 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HNF4AP41235 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.08■□□□□ 0.48
HNF4AP41235 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.08■□□□□ 0.48
HNF4AP41235 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.08■□□□□ 0.48
HNF4AP41235 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HNF4AP41235 CA15P1-201ENST00000481698 905 ntBASIC18.08■□□□□ 0.48
HNF4AP41235 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.08■□□□□ 0.48
HNF4AP41235 MYC-208ENST00000641036 567 ntBASIC18.08■□□□□ 0.48
HNF4AP41235 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.08■□□□□ 0.48
HNF4AP41235 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
HNF4AP41235 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HNF4AP41235 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.08■□□□□ 0.48
HNF4AP41235 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.08■□□□□ 0.48
HNF4AP41235 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
HNF4AP41235 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HNF4AP41235 AC090164.3-201ENST00000610780 2143 ntBASIC18.08■□□□□ 0.48
HNF4AP41235 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.08■□□□□ 0.48
HNF4AP41235 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.08■□□□□ 0.48
HNF4AP41235 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.08■□□□□ 0.48
HNF4AP41235 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HNF4AP41235 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.08■□□□□ 0.48
HNF4AP41235 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HNF4AP41235 RCC2P3-201ENST00000418112 1537 ntBASIC18.08■□□□□ 0.48
HNF4AP41235 AC090340.1-201ENST00000620778 4980 ntBASIC18.08■□□□□ 0.48
HNF4AP41235 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HNF4AP41235 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
HNF4AP41235 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.07■□□□□ 0.48
HNF4AP41235 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.07■□□□□ 0.48
HNF4AP41235 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.07■□□□□ 0.48
HNF4AP41235 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms