Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PTPN4P29074 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
PTPN4P29074 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.73■□□□□ 0.59
PTPN4P29074 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.73■□□□□ 0.59
PTPN4P29074 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.73■□□□□ 0.59
PTPN4P29074 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PTPN4P29074 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.73■□□□□ 0.59
PTPN4P29074 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.73■□□□□ 0.59
PTPN4P29074 AL355355.2-201ENST00000442321 338 ntBASIC18.73■□□□□ 0.59
PTPN4P29074 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.73■□□□□ 0.59
PTPN4P29074 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.73■□□□□ 0.59
PTPN4P29074 CD177P1-201ENST00000606252 935 ntBASIC18.73■□□□□ 0.59
PTPN4P29074 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.73■□□□□ 0.59
PTPN4P29074 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
PTPN4P29074 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PTPN4P29074 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN4P29074 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.73■□□□□ 0.59
PTPN4P29074 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN4P29074 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN4P29074 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PTPN4P29074 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN4P29074 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN4P29074 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN4P29074 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.72■□□□□ 0.59
PTPN4P29074 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.72■□□□□ 0.59
PTPN4P29074 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN4P29074 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN4P29074 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN4P29074 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
PTPN4P29074 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.72■□□□□ 0.59
PTPN4P29074 AP003071.4-201ENST00000562276 1284 ntBASIC18.72■□□□□ 0.59
PTPN4P29074 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.72■□□□□ 0.59
PTPN4P29074 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.72■□□□□ 0.59
PTPN4P29074 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.72■□□□□ 0.59
PTPN4P29074 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.72■□□□□ 0.59
PTPN4P29074 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN4P29074 HCG11-201ENST00000411553 5696 ntBASIC18.72■□□□□ 0.59
PTPN4P29074 AC012313.1-201ENST00000593393 3059 ntBASIC18.72■□□□□ 0.59
PTPN4P29074 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.72■□□□□ 0.59
PTPN4P29074 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.72■□□□□ 0.59
PTPN4P29074 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.72■□□□□ 0.59
PTPN4P29074 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PTPN4P29074 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
PTPN4P29074 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
PTPN4P29074 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN4P29074 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.71■□□□□ 0.59
PTPN4P29074 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN4P29074 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.71■□□□□ 0.59
PTPN4P29074 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN4P29074 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.71■□□□□ 0.59
PTPN4P29074 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN4P29074 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN4P29074 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN4P29074 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN4P29074 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN4P29074 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 AC073195.1-201ENST00000607241 877 ntBASIC18.71■□□□□ 0.59
PTPN4P29074 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN4P29074 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
PTPN4P29074 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
PTPN4P29074 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
PTPN4P29074 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.7■□□□□ 0.58
PTPN4P29074 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
PTPN4P29074 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.7■□□□□ 0.58
PTPN4P29074 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms