Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.18■□□□□ 0.5
PCNAP12004 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCNAP12004 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCNAP12004 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.18■□□□□ 0.5
PCNAP12004 AC233702.5-201ENST00000584107 538 ntBASIC18.18■□□□□ 0.5
PCNAP12004 AL512353.2-201ENST00000448759 1962 ntBASIC18.18■□□□□ 0.5
PCNAP12004 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCNAP12004 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.18■□□□□ 0.5
PCNAP12004 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCNAP12004 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCNAP12004 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCNAP12004 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.18■□□□□ 0.5
PCNAP12004 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.18■□□□□ 0.5
PCNAP12004 FZD10-202ENST00000539839 3282 ntBASIC18.18■□□□□ 0.5
PCNAP12004 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCNAP12004 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCNAP12004 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCNAP12004 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.18■□□□□ 0.5
PCNAP12004 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCNAP12004 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.18■□□□□ 0.5
PCNAP12004 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCNAP12004 AL133373.2-201ENST00000623187 2828 ntBASIC18.18■□□□□ 0.5
PCNAP12004 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCNAP12004 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.17■□□□□ 0.5
PCNAP12004 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 AL390961.4-201ENST00000623958 2535 ntBASIC18.17■□□□□ 0.5
PCNAP12004 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.17■□□□□ 0.5
PCNAP12004 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.17■□□□□ 0.5
PCNAP12004 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.17■□□□□ 0.5
PCNAP12004 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.17■□□□□ 0.5
PCNAP12004 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCNAP12004 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
PCNAP12004 MESTP1-201ENST00000404287 994 ntBASIC18.17■□□□□ 0.5
PCNAP12004 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.17■□□□□ 0.5
PCNAP12004 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 NUDT16P1-203ENST00000513809 620 ntBASIC18.17■□□□□ 0.5
PCNAP12004 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.17■□□□□ 0.5
PCNAP12004 Z99916.2-201ENST00000604037 246 ntBASIC18.17■□□□□ 0.5
PCNAP12004 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.17■□□□□ 0.5
PCNAP12004 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.17■□□□□ 0.5
PCNAP12004 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCNAP12004 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCNAP12004 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PCNAP12004 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.16■□□□□ 0.5
PCNAP12004 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.16■□□□□ 0.5
PCNAP12004 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.16■□□□□ 0.5
PCNAP12004 AL355355.2-201ENST00000442321 338 ntBASIC18.16■□□□□ 0.5
PCNAP12004 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.16■□□□□ 0.5
PCNAP12004 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.16■□□□□ 0.5
PCNAP12004 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.16■□□□□ 0.5
PCNAP12004 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.16■□□□□ 0.5
PCNAP12004 CKBP1-201ENST00000565489 1086 ntBASIC18.16■□□□□ 0.5
PCNAP12004 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PCNAP12004 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.16■□□□□ 0.5
PCNAP12004 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.16■□□□□ 0.5
PCNAP12004 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.16■□□□□ 0.5
PCNAP12004 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
PCNAP12004 WIZP1-201ENST00000531444 2299 ntBASIC18.16■□□□□ 0.5
PCNAP12004 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.16■□□□□ 0.5
PCNAP12004 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCNAP12004 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PCNAP12004 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.16■□□□□ 0.5
PCNAP12004 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
PCNAP12004 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCNAP12004 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.15■□□□□ 0.5
PCNAP12004 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.15■□□□□ 0.5
PCNAP12004 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.15■□□□□ 0.5
PCNAP12004 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCNAP12004 AL031598.1-201ENST00000561511 1773 ntBASIC18.15■□□□□ 0.5
PCNAP12004 Z98044.1-201ENST00000632503 1764 ntBASIC18.15■□□□□ 0.5
PCNAP12004 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCNAP12004 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.15■□□□□ 0.5
PCNAP12004 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCNAP12004 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PCNAP12004 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCNAP12004 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCNAP12004 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.15■□□□□ 0.5
PCNAP12004 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.15■□□□□ 0.5
PCNAP12004 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.15■□□□□ 0.5
PCNAP12004 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.15■□□□□ 0.5
PCNAP12004 AC008550.1-201ENST00000511500 884 ntBASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms