Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC22■■□□□ 1.11
HMGB1P09429 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 AC128688.1-201ENST00000487626 519 ntBASIC22■■□□□ 1.11
HMGB1P09429 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC22■■□□□ 1.11
HMGB1P09429 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGB1P09429 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGB1P09429 KRT8P7-201ENST00000533003 1432 ntBASIC21.99■■□□□ 1.11
HMGB1P09429 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.99■■□□□ 1.11
HMGB1P09429 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
HMGB1P09429 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.99■■□□□ 1.11
HMGB1P09429 AL596275.1-201ENST00000423464 877 ntBASIC21.99■■□□□ 1.11
HMGB1P09429 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.99■■□□□ 1.11
HMGB1P09429 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
HMGB1P09429 NAPSB-206ENST00000562112 1266 ntBASIC21.99■■□□□ 1.11
HMGB1P09429 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
HMGB1P09429 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGB1P09429 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
HMGB1P09429 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
HMGB1P09429 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.99■■□□□ 1.11
HMGB1P09429 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB1P09429 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB1P09429 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB1P09429 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
HMGB1P09429 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
HMGB1P09429 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB1P09429 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB1P09429 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
HMGB1P09429 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB1P09429 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.98■■□□□ 1.11
HMGB1P09429 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB1P09429 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.98■■□□□ 1.11
HMGB1P09429 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB1P09429 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB1P09429 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB1P09429 AC036111.1-201ENST00000533973 1582 ntBASIC21.98■■□□□ 1.11
HMGB1P09429 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB1P09429 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB1P09429 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB1P09429 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB1P09429 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
HMGB1P09429 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB1P09429 HOXB1-202ENST00000577092 1414 ntBASIC21.97■■□□□ 1.11
HMGB1P09429 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 CYP2D8P-201ENST00000433633 1490 ntBASIC21.97■■□□□ 1.11
HMGB1P09429 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
HMGB1P09429 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
HMGB1P09429 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.97■■□□□ 1.11
HMGB1P09429 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 CR769767.2-201ENST00000622735 460 ntBASIC21.97■■□□□ 1.11
HMGB1P09429 AC010947.1-201ENST00000623454 693 ntBASIC21.97■■□□□ 1.11
HMGB1P09429 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.97■■□□□ 1.11
HMGB1P09429 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 BICD1-207ENST00000551848 1962 ntBASIC21.97■■□□□ 1.11
HMGB1P09429 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.97■■□□□ 1.11
HMGB1P09429 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.97■■□□□ 1.11
HMGB1P09429 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB1P09429 AC135050.7-201ENST00000624508 2218 ntBASIC21.96■■□□□ 1.11
HMGB1P09429 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB1P09429 AL162741.1-201ENST00000565563 1558 ntBASIC21.96■■□□□ 1.11
HMGB1P09429 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB1P09429 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB1P09429 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
HMGB1P09429 RNF165-205ENST00000588679 2904 ntBASIC21.96■■□□□ 1.11
HMGB1P09429 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGB1P09429 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB1P09429 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB1P09429 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB1P09429 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGB1P09429 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms