Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.68■□□□□ 0.1
CD74P04233 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD74P04233 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC15.68■□□□□ 0.1
CD74P04233 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CD74P04233 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD74P04233 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD74P04233 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CD74P04233 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
CD74P04233 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC15.68■□□□□ 0.1
CD74P04233 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD74P04233 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CD74P04233 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.67■□□□□ 0.1
CD74P04233 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
CD74P04233 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CD74P04233 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 AL357033.4-201ENST00000617703 1807 ntBASIC15.67■□□□□ 0.1
CD74P04233 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC15.67■□□□□ 0.1
CD74P04233 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC15.67■□□□□ 0.1
CD74P04233 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 MARS-234ENST00000630571 216 ntTSL 5 BASIC15.67■□□□□ 0.1
CD74P04233 MARS-235ENST00000630803 183 ntTSL 3 BASIC15.67■□□□□ 0.1
CD74P04233 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CD74P04233 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CD74P04233 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CD74P04233 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
CD74P04233 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CD74P04233 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CD74P04233 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CD74P04233 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC15.66■□□□□ 0.1
CD74P04233 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CD74P04233 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CD74P04233 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.66■□□□□ 0.1
CD74P04233 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.66■□□□□ 0.1
CD74P04233 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CD74P04233 BX276092.2-201ENST00000417668 665 ntBASIC15.66■□□□□ 0.1
CD74P04233 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC15.66■□□□□ 0.1
CD74P04233 GXYLT1P2-201ENST00000433312 1230 ntBASIC15.66■□□□□ 0.1
CD74P04233 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15.66■□□□□ 0.1
CD74P04233 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CD74P04233 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC15.66■□□□□ 0.1
CD74P04233 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.66■□□□□ 0.1
CD74P04233 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CD74P04233 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
CD74P04233 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CD74P04233 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.65■□□□□ 0.1
CD74P04233 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms