Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF40O75150 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF40O75150 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF40O75150 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF40O75150 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
RNF40O75150 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
RNF40O75150 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.1■□□□□ 0.81
RNF40O75150 AC012313.1-201ENST00000593393 3059 ntBASIC20.1■□□□□ 0.81
RNF40O75150 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
RNF40O75150 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.1■□□□□ 0.81
RNF40O75150 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.1■□□□□ 0.81
RNF40O75150 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.1■□□□□ 0.81
RNF40O75150 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.1■□□□□ 0.81
RNF40O75150 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.1■□□□□ 0.81
RNF40O75150 C1QL1P1-201ENST00000568105 661 ntBASIC20.1■□□□□ 0.81
RNF40O75150 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
RNF40O75150 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 AC067852.2-201ENST00000590513 2313 ntBASIC20.1■□□□□ 0.81
RNF40O75150 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 AL031598.1-201ENST00000561511 1773 ntBASIC20.1■□□□□ 0.81
RNF40O75150 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.1■□□□□ 0.81
RNF40O75150 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
RNF40O75150 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 AC073508.3-201ENST00000619697 1419 ntBASIC20.1■□□□□ 0.81
RNF40O75150 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF40O75150 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
RNF40O75150 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
RNF40O75150 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.09■□□□□ 0.81
RNF40O75150 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF40O75150 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.09■□□□□ 0.81
RNF40O75150 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF40O75150 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF40O75150 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF40O75150 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF40O75150 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.09■□□□□ 0.81
RNF40O75150 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
RNF40O75150 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RNF40O75150 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
RNF40O75150 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.09■□□□□ 0.81
RNF40O75150 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF40O75150 AC090340.1-201ENST00000620778 4980 ntBASIC20.08■□□□□ 0.81
RNF40O75150 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF40O75150 AC139713.2-201ENST00000641328 2723 ntBASIC20.08■□□□□ 0.81
RNF40O75150 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF40O75150 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.08■□□□□ 0.81
RNF40O75150 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF40O75150 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF40O75150 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF40O75150 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RNF40O75150 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.08■□□□□ 0.81
RNF40O75150 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.08■□□□□ 0.81
RNF40O75150 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
RNF40O75150 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
RNF40O75150 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.08■□□□□ 0.81
RNF40O75150 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.08■□□□□ 0.8
RNF40O75150 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
RNF40O75150 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
RNF40O75150 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF40O75150 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
RNF40O75150 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF40O75150 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF40O75150 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF40O75150 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
RNF40O75150 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.08■□□□□ 0.8
RNF40O75150 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF40O75150 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.08■□□□□ 0.8
RNF40O75150 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF40O75150 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF40O75150 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF40O75150 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF40O75150 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF40O75150 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF40O75150 FSCN1P1-201ENST00000568912 1481 ntBASIC20.07■□□□□ 0.8
RNF40O75150 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 MESTP1-201ENST00000404287 994 ntBASIC20.07■□□□□ 0.8
RNF40O75150 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.07■□□□□ 0.8
RNF40O75150 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.07■□□□□ 0.8
RNF40O75150 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms