Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.12■□□□□ 0.49
UBFD1O14562 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.12■□□□□ 0.49
UBFD1O14562 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
UBFD1O14562 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBFD1O14562 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBFD1O14562 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBFD1O14562 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
UBFD1O14562 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBFD1O14562 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBFD1O14562 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBFD1O14562 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.12■□□□□ 0.49
UBFD1O14562 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.12■□□□□ 0.49
UBFD1O14562 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
UBFD1O14562 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.11■□□□□ 0.49
UBFD1O14562 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
UBFD1O14562 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
UBFD1O14562 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 MESTP1-201ENST00000404287 994 ntBASIC18.11■□□□□ 0.49
UBFD1O14562 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.11■□□□□ 0.49
UBFD1O14562 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 RPPH1-201ENST00000516869 333 ntBASIC18.11■□□□□ 0.49
UBFD1O14562 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
UBFD1O14562 AC008622.2-201ENST00000617006 1229 ntBASIC18.11■□□□□ 0.49
UBFD1O14562 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
UBFD1O14562 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
UBFD1O14562 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.11■□□□□ 0.49
UBFD1O14562 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
UBFD1O14562 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
UBFD1O14562 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
UBFD1O14562 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
UBFD1O14562 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.1■□□□□ 0.49
UBFD1O14562 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.1■□□□□ 0.49
UBFD1O14562 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.1■□□□□ 0.49
UBFD1O14562 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
UBFD1O14562 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.1■□□□□ 0.49
UBFD1O14562 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.1■□□□□ 0.49
UBFD1O14562 AL353807.1-201ENST00000427475 662 ntBASIC18.1■□□□□ 0.49
UBFD1O14562 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
UBFD1O14562 B3GAT3P1-201ENST00000471720 806 ntBASIC18.1■□□□□ 0.49
UBFD1O14562 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.1■□□□□ 0.49
UBFD1O14562 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.1■□□□□ 0.49
UBFD1O14562 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.1■□□□□ 0.49
UBFD1O14562 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
UBFD1O14562 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
UBFD1O14562 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.1■□□□□ 0.49
UBFD1O14562 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.09■□□□□ 0.49
UBFD1O14562 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.09■□□□□ 0.49
UBFD1O14562 MYLKP1-201ENST00000509077 1580 ntBASIC18.09■□□□□ 0.49
UBFD1O14562 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 AP000997.3-201ENST00000623333 2250 ntBASIC18.09■□□□□ 0.49
UBFD1O14562 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.09■□□□□ 0.49
UBFD1O14562 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 FAM207BP-201ENST00000447172 505 ntBASIC18.09■□□□□ 0.49
UBFD1O14562 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.09■□□□□ 0.49
UBFD1O14562 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.09■□□□□ 0.49
UBFD1O14562 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.09■□□□□ 0.49
UBFD1O14562 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.09■□□□□ 0.49
UBFD1O14562 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
UBFD1O14562 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.09■□□□□ 0.49
UBFD1O14562 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.09■□□□□ 0.49
UBFD1O14562 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms